Tim O. Nieuwenhuis
| Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022) |
| git_url: https://git.bioconductor.org/packages/HPAStainR |
| git_branch: master |
| git_last_commit: 8b207dd |
| git_last_commit_date: 2021-11-25 10:06:06 -0400 (Thu, 25 Nov 2021) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-03-18 11:07:46 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the HPAStainR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPAStainR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 888/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HPAStainR 1.5.1 (landing page) Tim O. Nieuwenhuis
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | OK | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: HPAStainR |
| Version: 1.5.1 |
| Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:HPAStainR.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings HPAStainR_1.5.1.tar.gz |
| StartedAt: 2022-03-17 19:20:04 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 19:23:44 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 220.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HPAStainR.Rcheck |
| Warnings: 0 |
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###
### Running command:
###
### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:HPAStainR.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings HPAStainR_1.5.1.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'D:/biocbuild/bbs-3.15-bioc/meat/HPAStainR.Rcheck'
* using R Under development (unstable) (2021-11-21 r81221)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'HPAStainR/DESCRIPTION' ... OK
* this is package 'HPAStainR' version '1.5.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'HPAStainR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
HPAstainR 7.10 1.95 22.53
HPA_data_downloader 3.18 1.47 13.11
shiny_HPAStainR 2.90 0.70 8.02
hpa_summary_maker 2.60 0.78 25.15
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
HPAStainR.Rcheck/00install.out
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###
### Running command:
###
### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL HPAStainR
###
##############################################################################
##############################################################################
* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'HPAStainR' ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'HPAStainR'
finding HTML links ... done
HPA_data_downloader html
HPAstainR html
hpa_summary_maker html
shiny_HPAStainR html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (HPAStainR)
Making 'packages.html' ... done
HPAStainR.Rcheck/tests/testthat.Rout
R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(HPAStainR)
Loading required package: dplyr
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Loading required package: tidyr
Attaching package: 'tidyr'
The following object is masked from 'package:testthat':
matches
>
> test_check("HPAStainR")
trying URL 'https://www.proteinatlas.org/download/normal_tissue.tsv.zip'
length 5596382 bytes (5.3 MB)
==================================================
downloaded 5.3 MB
trying URL 'https://www.proteinatlas.org/download/pathology.tsv.zip'
length 3609266 bytes (3.4 MB)
==================================================
downloaded 3.4 MB
trying URL 'https://www.proteinatlas.org/download/normal_tissue.tsv.zip'
length 5596382 bytes (5.3 MB)
==================================================
downloaded 5.3 MB
trying URL 'https://www.proteinatlas.org/download/pathology.tsv.zip'
length 3609266 bytes (3.4 MB)
==================================================
downloaded 3.4 MB
trying URL 'https://www.proteinatlas.org/download/normal_tissue.tsv.zip'
length 5596382 bytes (5.3 MB)
==================================================
downloaded 5.3 MB
trying URL 'https://www.proteinatlas.org/download/pathology.tsv.zip'
length 3609266 bytes (3.4 MB)
==================================================
downloaded 3.4 MB
trying URL 'https://www.proteinatlas.org/download/normal_tissue.tsv.zip'
length 5596382 bytes (5.3 MB)
==================================================
downloaded 5.3 MB
trying URL 'https://www.proteinatlas.org/download/pathology.tsv.zip'
length 3609266 bytes (3.4 MB)
==================================================
downloaded 3.4 MB
trying URL 'https://www.proteinatlas.org/download/normal_tissue.tsv.zip'
length 5596382 bytes (5.3 MB)
==================================================
downloaded 5.3 MB
trying URL 'https://www.proteinatlas.org/download/pathology.tsv.zip'
length 3609266 bytes (3.4 MB)
==================================================
downloaded 3.4 MB
trying URL 'https://www.proteinatlas.org/download/normal_tissue.tsv.zip'
length 5596382 bytes (5.3 MB)
==================================================
downloaded 5.3 MB
trying URL 'https://www.proteinatlas.org/download/pathology.tsv.zip'
length 3609266 bytes (3.4 MB)
==================================================
downloaded 3.4 MB
trying URL 'https://www.proteinatlas.org/download/normal_tissue.tsv.zip'
length 5596382 bytes (5.3 MB)
==================================================
downloaded 5.3 MB
trying URL 'https://www.proteinatlas.org/download/pathology.tsv.zip'
length 3609266 bytes (3.4 MB)
==================================================
downloaded 3.4 MB
trying URL 'https://www.proteinatlas.org/download/normal_tissue.tsv.zip'
length 5596382 bytes (5.3 MB)
==================================================
downloaded 5.3 MB
trying URL 'https://www.proteinatlas.org/download/pathology.tsv.zip'
length 3609266 bytes (3.4 MB)
==================================================
downloaded 3.4 MB
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 9 ]
>
> proc.time()
user system elapsed
17.25 5.15 103.10
HPAStainR.Rcheck/HPAStainR-Ex.timings
| name | user | system | elapsed | |
| HPA_data_downloader | 3.18 | 1.47 | 13.11 | |
| HPAstainR | 7.10 | 1.95 | 22.53 | |
| hpa_summary_maker | 2.60 | 0.78 | 25.15 | |
| shiny_HPAStainR | 2.90 | 0.70 | 8.02 | |