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This page was generated on 2022-03-18 11:07:38 -0400 (Fri, 18 Mar 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" 4334
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4097
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" 4083
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" 4134
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for GeomxTools on riesling1


To the developers/maintainers of the GeomxTools package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GeomxTools.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 769/2090HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GeomxTools 2.1.0  (landing page)
Nicole Ortogero
Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022)
git_url: https://git.bioconductor.org/packages/GeomxTools
git_branch: master
git_last_commit: f786ad8
git_last_commit_date: 2021-10-26 13:06:34 -0400 (Tue, 26 Oct 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: GeomxTools
Version: 2.1.0
Command: rm -rf GeomxTools.buildbin-libdir && mkdir GeomxTools.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=GeomxTools.buildbin-libdir GeomxTools_2.1.0.tar.gz
StartedAt: 2022-03-17 21:11:25 -0400 (Thu, 17 Mar 2022)
EndedAt: 2022-03-17 21:12:50 -0400 (Thu, 17 Mar 2022)
EllapsedTime: 84.7 seconds
RetCode: 0
Status:   OK  
PackageFile: GeomxTools_2.1.0.zip
PackageFileSize: 4.809 MiB

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf GeomxTools.buildbin-libdir && mkdir GeomxTools.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=GeomxTools.buildbin-libdir GeomxTools_2.1.0.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'GeomxTools' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'GeomxTools'
    finding HTML links ... done
    NanoStringGeoMxSet-class                html  
    finding level-2 HTML links ... done

    aggregateCounts                         html  
    checkQCFlags-NanoStringGeoMxSet-method
                                            html  
    checkQCFlags                            html  
    countsShiftedByOne                      html  
    logtBase                                html  
    mixedModelDE                            html  
    ngeoMean                                html  
    ngeoSD                                  html  
    normalize-NanoStringGeoMxSet-method     html  
    readDccFile                             html  
    readNanoStringGeoMxSet                  html  
    readPKCFile                             html  
    setBackgroundQCFlags                    html  
    setBioProbeQCFlags                      html  
    setGeoMxQCFlags                         html  
    setQCFlags-NanoStringGeoMxSet-method    html  
    setSegmentQCFlags                       html  
    setSeqQCFlags                           html  
    shiftCountsOne                          html  
    summarizeNegatives                      html  
    writeNanoStringGeoMxSet                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'GeomxTools' as GeomxTools_2.1.0.zip
* DONE (GeomxTools)