This page was generated on 2022-10-19 13:20:21 -0400 (Wed, 19 Oct 2022).
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### Running command:
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### /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data GRaNIE
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* checking for file ‘GRaNIE/DESCRIPTION’ ... OK
* preparing ‘GRaNIE’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘GRaNIE_workflow.Rmd’ using rmarkdown
── Attaching packages ─────────────────────────────────────── tidyverse 1.3.2 ──
✔ ggplot2 3.3.6 ✔ purrr 0.3.5
✔ tibble 3.1.8 ✔ dplyr 1.0.10
✔ tidyr 1.2.1 ✔ stringr 1.4.1
✔ readr 2.1.3 ✔ forcats 0.5.2
── Conflicts ────────────────────────────────────────── tidyverse_conflicts() ──
✖ dplyr::filter() masks stats::filter()
✖ dplyr::lag() masks stats::lag()
Loading required package: topGO
Loading required package: BiocGenerics
Attaching package: 'BiocGenerics'
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Loading required package: graph
Attaching package: 'graph'
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Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Loading required package: GO.db
Loading required package: AnnotationDbi
Loading required package: stats4
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Welcome to the GRaNIE package and thank you for using our software. This is GRaNIE version 1.0.7.
All project-related information, guidance, help, documentation and ways to contact us can be found in the R help or here:
https://grp-zaugg.embl-community.io/GRaNIE
Loading required package: Matrix
Attaching package: 'Matrix'
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Ensembl site unresponsive, trying asia mirror
Quitting from lines 356-359 (GRaNIE_workflow.Rmd)
Error: processing vignette 'GRaNIE_workflow.Rmd' failed with diagnostics:
Gateway Timeout (HTTP 504).
--- failed re-building ‘GRaNIE_workflow.Rmd’
SUMMARY: processing the following file failed:
‘GRaNIE_workflow.Rmd’
Error: Vignette re-building failed.
Execution halted