Tomoyuki Furuta
| Snapshot Date: 2022-10-18 13:55:19 -0400 (Tue, 18 Oct 2022) |
| git_url: https://git.bioconductor.org/packages/GBScleanR |
| git_branch: RELEASE_3_15 |
| git_last_commit: b95e1b2 |
| git_last_commit_date: 2022-10-17 11:01:34 -0400 (Mon, 17 Oct 2022) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-10-19 13:21:31 -0400 (Wed, 19 Oct 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4386 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" | 4138 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4205 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the GBScleanR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GBScleanR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 723/2140 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| GBScleanR 1.0.6 (landing page) Tomoyuki Furuta
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: GBScleanR |
| Version: 1.0.6 |
| Command: chmod a+r GBScleanR -R && F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data GBScleanR |
| StartedAt: 2022-10-18 18:41:20 -0400 (Tue, 18 Oct 2022) |
| EndedAt: 2022-10-18 18:42:51 -0400 (Tue, 18 Oct 2022) |
| EllapsedTime: 91.6 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r GBScleanR -R && F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data GBScleanR ### ############################################################################## ############################################################################## * checking for file 'GBScleanR/DESCRIPTION' ... OK * preparing 'GBScleanR': * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'BasicUsageOfGBScleanR.rmd' using rmarkdown Loading required package: SeqArray Loading required package: gdsfmt `stat_bin()` using `bins = 30`. Pick better value with `binwidth`. `stat_bin()` using `bins = 30`. Pick better value with `binwidth`. `stat_bin()` using `bins = 30`. Pick better value with `binwidth`. `stat_bin()` using `bins = 30`. Pick better value with `binwidth`. `stat_bin()` using `bins = 30`. Pick better value with `binwidth`. `stat_bin()` using `bins = 30`. Pick better value with `binwidth`. `stat_bin()` using `bins = 30`. Pick better value with `binwidth`. Set the number of threads: 1 Start cleaning... Now cleaning chr 1... Cycle 1: Forward path... Cycle 1: Backward path... Cycle 1: Estimating allele read bias and mismapping pattern... Cycle 2: Forward path... Cycle 2: Backward path... Cycle 2: Estimating allele read bias and mismapping pattern... Cycle 3: Forward path... Cycle 3: Backward path... Cycle 3: Estimating allele read bias and mismapping pattern... Cycle 4: Forward path... Cycle 4: Backward path... Summarizing output... Done! Quitting from lines 679-681 (BasicUsageOfGBScleanR.rmd) Error: processing vignette 'BasicUsageOfGBScleanR.rmd' failed with diagnostics: Stream Read Error, need 12 byte(s) but receive 0 --- failed re-building 'BasicUsageOfGBScleanR.rmd' SUMMARY: processing the following file failed: 'BasicUsageOfGBScleanR.rmd' Error: Vignette re-building failed. Execution halted