Back to Multiple platform build/check report for BioC 3.15 |
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This page was generated on 2022-10-19 13:20:10 -0400 (Wed, 19 Oct 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4386 |
palomino3 | Windows Server 2022 Datacenter | x64 | 4.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" | 4138 |
merida1 | macOS 10.14.6 Mojave | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4205 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the DeepBlueR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DeepBlueR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 488/2140 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
DeepBlueR 1.22.0 (landing page) Felipe Albrecht
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: DeepBlueR |
Version: 1.22.0 |
Command: /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:DeepBlueR.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings DeepBlueR_1.22.0.tar.gz |
StartedAt: 2022-10-18 19:20:38 -0400 (Tue, 18 Oct 2022) |
EndedAt: 2022-10-18 19:25:10 -0400 (Tue, 18 Oct 2022) |
EllapsedTime: 271.9 seconds |
RetCode: 0 |
Status: OK |
CheckDir: DeepBlueR.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:DeepBlueR.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings DeepBlueR_1.22.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.15-bioc/meat/DeepBlueR.Rcheck’ * using R version 4.2.1 (2022-06-23) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘DeepBlueR/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘DeepBlueR’ version ‘1.22.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘DeepBlueR’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE prepare_Rd: deepblue_enrich_regions_fast.Rd:35-38: Dropping empty section \examples * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed deepblue_enrich_regions_overlap 0.607 0.105 5.294 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.15-bioc/meat/DeepBlueR.Rcheck/00check.log’ for details.
DeepBlueR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD INSTALL DeepBlueR ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.15-bioc/R/library’ * installing *source* package ‘DeepBlueR’ ... ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading Called method: deepblue_list_column_types Reported status was: okay Called method: deepblue_info Reported status was: okay ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DeepBlueR)
DeepBlueR.Rcheck/DeepBlueR-Ex.timings
name | user | system | elapsed | |
deepblue_aggregate | 0.065 | 0.008 | 0.938 | |
deepblue_batch_export_results | 0.298 | 0.032 | 3.451 | |
deepblue_binning | 0.035 | 0.012 | 0.610 | |
deepblue_cache_status | 0.004 | 0.000 | 0.003 | |
deepblue_cancel_request | 0.019 | 0.000 | 0.313 | |
deepblue_chromosomes | 0.086 | 0.016 | 0.387 | |
deepblue_clear_cache | 0.002 | 0.000 | 0.001 | |
deepblue_collection_experiments_count | 0.109 | 0.004 | 0.675 | |
deepblue_commands | 0.136 | 0.012 | 1.721 | |
deepblue_count_gene_ontology_terms | 0.113 | 0.008 | 0.620 | |
deepblue_count_regions | 0.034 | 0.008 | 0.625 | |
deepblue_coverage | 0.036 | 0.008 | 0.565 | |
deepblue_delete_request_from_cache | 0.001 | 0.003 | 0.003 | |
deepblue_diff | 0.102 | 0.012 | 0.702 | |
deepblue_distinct_column_values | 0.032 | 0.003 | 0.635 | |
deepblue_download_request_data | 0.178 | 0.039 | 1.604 | |
deepblue_echo | 0.010 | 0.005 | 0.312 | |
deepblue_enrich_regions_go_terms | 0.066 | 0.008 | 0.930 | |
deepblue_enrich_regions_overlap | 0.607 | 0.105 | 5.294 | |
deepblue_export_bed | 0.178 | 0.034 | 2.151 | |
deepblue_export_meta_data | 0.273 | 0.012 | 0.697 | |
deepblue_export_tab | 0.097 | 0.028 | 1.223 | |
deepblue_extend | 0.036 | 0.012 | 0.609 | |
deepblue_extract_ids | 0.001 | 0.000 | 0.001 | |
deepblue_extract_names | 0.001 | 0.000 | 0.001 | |
deepblue_faceting_experiments | 0.029 | 0.000 | 0.660 | |
deepblue_filter_regions | 0.034 | 0.007 | 0.334 | |
deepblue_find_motif | 0.036 | 0.000 | 0.281 | |
deepblue_flank | 0.054 | 0.004 | 0.630 | |
deepblue_get_biosource_children | 0.019 | 0.003 | 0.317 | |
deepblue_get_biosource_parents | 0.014 | 0.004 | 0.309 | |
deepblue_get_biosource_related | 0.023 | 0.000 | 0.321 | |
deepblue_get_biosource_synonyms | 0.017 | 0.004 | 0.311 | |
deepblue_get_experiments_by_query | 0.019 | 0.000 | 0.304 | |
deepblue_get_regions | 0.039 | 0.004 | 0.601 | |
deepblue_get_request_data | 0.064 | 0.004 | 1.260 | |
deepblue_info | 0.052 | 0.028 | 0.368 | |
deepblue_input_regions | 0.021 | 0.000 | 0.345 | |
deepblue_intersection | 0.062 | 0.004 | 0.907 | |
deepblue_is_biosource | 0.014 | 0.000 | 0.299 | |
deepblue_liftover | 0.400 | 0.053 | 2.715 | |
deepblue_list_annotations | 0.022 | 0.004 | 0.322 | |
deepblue_list_biosources | 0.014 | 0.008 | 0.319 | |
deepblue_list_cached_requests | 0.003 | 0.000 | 0.003 | |
deepblue_list_column_types | 0.049 | 0.020 | 0.482 | |
deepblue_list_epigenetic_marks | 0.306 | 0.145 | 1.553 | |
deepblue_list_experiments | 0.105 | 0.072 | 0.847 | |
deepblue_list_expressions | 0.169 | 0.039 | 0.753 | |
deepblue_list_gene_models | 0.011 | 0.008 | 0.306 | |
deepblue_list_genes | 0.241 | 0.048 | 1.798 | |
deepblue_list_genomes | 0.020 | 0.000 | 0.318 | |
deepblue_list_in_use | 0.284 | 0.068 | 1.950 | |
deepblue_list_projects | 0.012 | 0.012 | 0.318 | |
deepblue_list_recent_experiments | 0.036 | 0.000 | 0.339 | |
deepblue_list_requests | 0.027 | 0.000 | 0.319 | |
deepblue_list_samples | 0.130 | 0.075 | 1.061 | |
deepblue_list_similar_biosources | 0.020 | 0.029 | 0.463 | |
deepblue_list_similar_epigenetic_marks | 0.024 | 0.007 | 0.337 | |
deepblue_list_similar_experiments | 0.009 | 0.011 | 0.899 | |
deepblue_list_similar_genomes | 0.012 | 0.016 | 0.283 | |
deepblue_list_similar_projects | 0.016 | 0.008 | 0.311 | |
deepblue_list_similar_techniques | 0.026 | 0.000 | 0.312 | |
deepblue_list_techniques | 0.022 | 0.011 | 0.327 | |
deepblue_merge_queries | 0.063 | 0.016 | 1.071 | |
deepblue_meta_data_to_table | 0.342 | 0.088 | 1.110 | |
deepblue_name_to_id | 0.060 | 0.005 | 0.870 | |
deepblue_overlap | 0.074 | 0.014 | 0.927 | |
deepblue_preview_experiment | 0.014 | 0.005 | 0.316 | |
deepblue_query_cache | 0.081 | 0.012 | 1.214 | |
deepblue_query_experiment_type | 0.047 | 0.000 | 0.639 | |
deepblue_reset_options | 0.000 | 0.001 | 0.001 | |
deepblue_score_matrix | 0.035 | 0.015 | 0.641 | |
deepblue_search | 0.029 | 0.012 | 0.655 | |
deepblue_select_annotations | 0.015 | 0.007 | 0.271 | |
deepblue_select_column | 0.247 | 0.028 | 1.271 | |
deepblue_select_experiments | 0.018 | 0.004 | 0.322 | |
deepblue_select_expressions | 0.027 | 0.001 | 0.274 | |
deepblue_select_genes | 0.028 | 0.000 | 0.297 | |
deepblue_select_regions | 0.028 | 0.000 | 0.315 | |
deepblue_tiling_regions | 0.023 | 0.000 | 0.315 | |