| Back to Multiple platform build/check report for BioC 3.15 |
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This page was generated on 2022-03-18 11:07:08 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the CellBarcode package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CellBarcode.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 261/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| CellBarcode 1.1.0 (landing page) Wenjie Sun
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | OK | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
| Package: CellBarcode |
| Version: 1.1.0 |
| Command: rm -rf CellBarcode.buildbin-libdir && mkdir CellBarcode.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=CellBarcode.buildbin-libdir CellBarcode_1.1.0.tar.gz |
| StartedAt: 2022-03-17 20:58:29 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 21:00:05 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 96.2 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: CellBarcode_1.1.0.zip |
| PackageFileSize: 2.872 MiB |
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### Running command:
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### rm -rf CellBarcode.buildbin-libdir && mkdir CellBarcode.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=CellBarcode.buildbin-libdir CellBarcode_1.1.0.tar.gz
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* installing *source* package 'CellBarcode' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c lib.cpp -o lib.o
lib.cpp: In function 'int hamm_dist(std::__cxx11::string, std::__cxx11::string)':
lib.cpp:59:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (int i=0; i < s1.length(); i++) {
~~^~~~~~~~~~~~~
lib.cpp: In function 'Rcpp::List seq_correct(std::vector<std::__cxx11::basic_string<char> >, Rcpp::IntegerVector, int, int, int, int, int, int)':
lib.cpp:123:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (auto i=0; i<seq.size(); i++) {
~^~~~~~~~~~~
lib.cpp:159:18: warning: variable 'flag_is_connetcted' set but not used [-Wunused-but-set-variable]
bool flag_is_connetcted = false;
^~~~~~~~~~~~~~~~~~
lib.cpp:230:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::pair<std::__cxx11::basic_string<char>, int> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (auto i=0; i<res.size(); i++) {
~^~~~~~~~~~~
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o CellBarcode.dll tmp.def RcppExports.o lib.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/meat/CellBarcode.buildbin-libdir/00LOCK-CellBarcode/00new/CellBarcode/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'CellBarcode'
finding HTML links ... done
BarcodeObj html
CellBarcode html
bc_2df html
bc_auto_cutoff html
bc_barcodes html
bc_cleanBc html
bc_cure_cluster html
bc_cure_depth html
bc_cure_umi html
bc_extract html
bc_messyBc html
bc_meta html
bc_names html
bc_obj html
bc_plot_mutual html
bc_plot_pair html
bc_plot_single html
bc_seq_filter html
bc_seq_qc html
bc_subset html
bc_summary_barcode html
bc_summary_seqQc html
format html
show html
sub-BarcodeQcSet-ANY-ANY-ANY-method html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'CellBarcode' as CellBarcode_1.1.0.zip
* DONE (CellBarcode)