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This page was generated on 2022-03-18 11:07:13 -0400 (Fri, 18 Mar 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" 4334
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4097
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" 4083
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" 4134
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for CNORode on riesling1


To the developers/maintainers of the CNORode package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CNORode.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 352/2090HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CNORode 1.37.0  (landing page)
Attila Gabor
Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022)
git_url: https://git.bioconductor.org/packages/CNORode
git_branch: master
git_last_commit: 014fba3
git_last_commit_date: 2021-10-26 12:04:57 -0400 (Tue, 26 Oct 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    ERROR  skipped
riesling1Windows Server 2019 Standard / x64  OK    ERROR  skippedskipped
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: CNORode
Version: 1.37.0
Command: chmod a+r CNORode -R && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data CNORode
StartedAt: 2022-03-17 16:37:30 -0400 (Thu, 17 Mar 2022)
EndedAt: 2022-03-17 16:37:56 -0400 (Thu, 17 Mar 2022)
EllapsedTime: 26.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r CNORode -R && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data CNORode
###
##############################################################################
##############################################################################


* checking for file 'CNORode/DESCRIPTION' ... OK
* preparing 'CNORode':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'CNORode-vignette.Rnw' using Sweave
Loading required package: CellNOptR
Loading required package: RBGL
Loading required package: graph
Loading required package: BiocGenerics

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated,
    append, as.data.frame, basename, cbind, colnames, dirname,
    do.call, duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, mapply, match, mget,
    order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
    rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit, which.max, which.min

Loading required package: hash
hash-2.2.6.1 provided by Decision Patterns

Loading required package: RCurl
Loading required package: Rgraphviz
Loading required package: grid
Loading required package: XML

Attaching package: ‘XML’

The following object is masked from ‘package:graph’:

    addNode

Loading required package: ggplot2
Loading required package: genalg

Attaching package: ‘CNORode’

The following object is masked from ‘package:stats’:

    simulate


Error: processing vignette 'CNORode-vignette.Rnw' failed with diagnostics:
 chunk 8 (label = plotModelSim) 
Error in CNOlist(cnolist) : 
  Input data must be a filename or the output of CellNOptR::makeCNOlist function

--- failed re-building ‘CNORode-vignette.Rnw’

SUMMARY: processing the following file failed:
  ‘CNORode-vignette.Rnw’

Error: Vignette re-building failed.
Execution halted