Back to Multiple platform build/check report for BioC 3.15
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This page was generated on 2022-03-18 11:07:06 -0400 (Fri, 18 Mar 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" 4334
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4097
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" 4083
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" 4134
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for CATALYST on riesling1


To the developers/maintainers of the CATALYST package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CATALYST.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 247/2090HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CATALYST 1.19.1  (landing page)
Helena L. Crowell
Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022)
git_url: https://git.bioconductor.org/packages/CATALYST
git_branch: master
git_last_commit: bfeddc9
git_last_commit_date: 2022-01-14 07:45:02 -0400 (Fri, 14 Jan 2022)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  NO, package depends on 'FlowSOM' which is not available
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: CATALYST
Version: 1.19.1
Command: rm -rf CATALYST.buildbin-libdir && mkdir CATALYST.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=CATALYST.buildbin-libdir CATALYST_1.19.1.tar.gz
StartedAt: 2022-03-17 20:57:55 -0400 (Thu, 17 Mar 2022)
EndedAt: 2022-03-17 20:59:38 -0400 (Thu, 17 Mar 2022)
EllapsedTime: 102.1 seconds
RetCode: 0
Status:   OK  
PackageFile: CATALYST_1.19.1.zip
PackageFileSize: 7.626 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf CATALYST.buildbin-libdir && mkdir CATALYST.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=CATALYST.buildbin-libdir CATALYST_1.19.1.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'CATALYST' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'CATALYST'
    finding HTML links ... done
    SCE-accessors                           html  
    finding level-2 HTML links ... done

    adaptSpillmat                           html  
    applyCutoffs                            html  
    assignPrelim                            html  
    clrDR                                   html  
    cluster                                 html  
    compCytof                               html  
    computeSpillmat                         html  
    data                                    html  
    estCutoffs                              html  
    extractClusters                         html  
    filterSCE                               html  
    guessPanel                              html  
    mergeClusters                           html  
    normCytof                               html  
    pbMDS                                   html  
    plotAbundances                          html  
    plotClusterExprs                        html  
    plotClusterHeatmap                      html  
    plotCodes                               html  
    plotCounts                              html  
    plotDR                                  html  
    plotDiffHeatmap                         html  
    plotEvents                              html  
    plotExprHeatmap                         html  
    plotExprs                               html  
    plotFreqHeatmap                         html  
    plotMahal                               html  
    plotMultiHeatmap                        html  
    plotNRS                                 html  
    plotPbExprs                             html  
    plotScatter                             html  
    plotSpillmat                            html  
    plotYields                              html  
    prepData                                html  
    runDR                                   html  
    sce2fcs                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'CATALYST' as CATALYST_1.19.1.zip
* DONE (CATALYST)