| Back to Multiple platform build/check report for BioC 3.15 |
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This page was generated on 2022-10-19 13:20:00 -0400 (Wed, 19 Oct 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4386 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" | 4138 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4205 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the BiocFileCache package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BiocFileCache.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 159/2140 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| BiocFileCache 2.4.0 (landing page) Lori Shepherd
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
| Package: BiocFileCache |
| Version: 2.4.0 |
| Command: /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:BiocFileCache.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings BiocFileCache_2.4.0.tar.gz |
| StartedAt: 2022-10-18 18:44:28 -0400 (Tue, 18 Oct 2022) |
| EndedAt: 2022-10-18 18:45:35 -0400 (Tue, 18 Oct 2022) |
| EllapsedTime: 67.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: BiocFileCache.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:BiocFileCache.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings BiocFileCache_2.4.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.15-bioc/meat/BiocFileCache.Rcheck’ * using R version 4.2.1 (2022-06-23) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘BiocFileCache/DESCRIPTION’ ... OK * this is package ‘BiocFileCache’ version ‘2.4.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘BiocFileCache’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE .sql_clean_cache: no visible binding for global variable ‘rid’ .sql_clean_cache: no visible binding for global variable ‘access_time’ .sql_get_resource_table: no visible binding for global variable ‘rid’ .sql_get_resource_table: no visible binding for global variable ‘id’ Undefined global functions or variables: access_time id rid * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.15-bioc/meat/BiocFileCache.Rcheck/00check.log’ for details.
BiocFileCache.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD INSTALL BiocFileCache ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.15-bioc/R/library’ * installing *source* package ‘BiocFileCache’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BiocFileCache)
BiocFileCache.Rcheck/tests/testthat.Rout
R version 4.2.1 (2022-06-23) -- "Funny-Looking Kid"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(BiocFileCache)
Loading required package: dbplyr
>
> test_check("BiocFileCache")
adding: BiocFileCacheExport/ (stored 0%)
adding: BiocFileCacheExport/file2697946c2d8ef7 (stored 0%)
adding: BiocFileCacheExport/2697946435f374_file2697946c2d8ef7 (stored 0%)
adding: BiocFileCacheExport/BiocFileCache.sqlite (deflated 96%)
[ FAIL 0 | WARN 2 | SKIP 0 | PASS 254 ]
[ FAIL 0 | WARN 2 | SKIP 0 | PASS 254 ]
>
> proc.time()
user system elapsed
20.973 0.812 24.252
BiocFileCache.Rcheck/BiocFileCache-Ex.timings
| name | user | system | elapsed | |
| BFCOption | 0.000 | 0.000 | 0.001 | |
| BiocFileCache-class | 3.512 | 0.076 | 3.687 | |
| makeCachedActiveBinding | 0.001 | 0.000 | 0.001 | |