Back to Multiple platform build/check report for BioC 3.15
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This page was generated on 2022-03-18 11:06:55 -0400 (Fri, 18 Mar 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" 4334
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4097
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" 4083
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" 4134
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for AnnotationForge on riesling1


To the developers/maintainers of the AnnotationForge package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/AnnotationForge.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 59/2090HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
AnnotationForge 1.37.3  (landing page)
Bioconductor Package Maintainer
Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022)
git_url: https://git.bioconductor.org/packages/AnnotationForge
git_branch: master
git_last_commit: aed6ba0
git_last_commit_date: 2022-03-10 11:57:42 -0400 (Thu, 10 Mar 2022)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    ERROR  skipped
riesling1Windows Server 2019 Standard / x64  OK    ERROR  skippedskipped
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: AnnotationForge
Version: 1.37.3
Command: chmod a+r AnnotationForge -R && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data AnnotationForge
StartedAt: 2022-03-17 16:22:11 -0400 (Thu, 17 Mar 2022)
EndedAt: 2022-03-17 16:25:00 -0400 (Thu, 17 Mar 2022)
EllapsedTime: 168.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r AnnotationForge -R && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data AnnotationForge
###
##############################################################################
##############################################################################


* checking for file 'AnnotationForge/DESCRIPTION' ... OK
* preparing 'AnnotationForge':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'MakingNewAnnotationPackages.Rnw' using knitr
Quitting from lines 208-215 (MakingNewAnnotationPackages.Rnw) 
Error: processing vignette 'MakingNewAnnotationPackages.Rnw' failed with diagnostics:
cannot open the connection
--- failed re-building 'MakingNewAnnotationPackages.Rnw'

--- re-building 'MakingNewOrganismPackages.Rmd' using knitr
--- finished re-building 'MakingNewOrganismPackages.Rmd'

--- re-building 'SQLForge.Rnw' using knitr
--- finished re-building 'SQLForge.Rnw'

--- re-building 'makeProbePackage.Rnw' using knitr
Warning: call dbDisconnect() when finished working with a connection

See
  'D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpW28Zfn/hgu95av2probe.Rcheck/00check.log'
for details.


The filename, directory name, or volume label syntax is incorrect.
--- finished re-building 'makeProbePackage.Rnw'

SUMMARY: processing the following file failed:
  'MakingNewAnnotationPackages.Rnw'

Error: Vignette re-building failed.
Execution halted