| Back to Workflows build report for BioC 3.14 |
This page was generated on 2022-04-11 21:00:10 -0400 (Mon, 11 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4323 |
| riesling1 | Windows Server 2019 Standard | x64 | 4.1.2 (2021-11-01) -- "Bird Hippie" | 4108 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4136 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the TCGAWorkflow package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 28/29 | Hostname | OS / Arch | INSTALL | BUILD | ||||||||
| TCGAWorkflow 1.18.1 (landing page) Tiago Chedraoui Silva
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | ERROR | ||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | |||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | ERROR | |||||||||
| Package: TCGAWorkflow |
| Version: 1.18.1 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/workflows/src/contrib/TCGAWorkflow_1.18.1.tar.gz && rm -rf TCGAWorkflow.buildbin-libdir && mkdir TCGAWorkflow.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TCGAWorkflow.buildbin-libdir TCGAWorkflow_1.18.1.tar.gz && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL TCGAWorkflow_1.18.1.zip && rm TCGAWorkflow_1.18.1.tar.gz TCGAWorkflow_1.18.1.zip |
| StartedAt: 2022-04-11 15:01:17 -0400 (Mon, 11 Apr 2022) |
| EndedAt: 2022-04-11 15:02:23 -0400 (Mon, 11 Apr 2022) |
| EllapsedTime: 66.3 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/workflows/src/contrib/TCGAWorkflow_1.18.1.tar.gz && rm -rf TCGAWorkflow.buildbin-libdir && mkdir TCGAWorkflow.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TCGAWorkflow.buildbin-libdir TCGAWorkflow_1.18.1.tar.gz && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL TCGAWorkflow_1.18.1.zip && rm TCGAWorkflow_1.18.1.tar.gz TCGAWorkflow_1.18.1.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
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0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 204k 100 204k 0 0 391k 0 --:--:-- --:--:-- --:--:-- 391k
install for i386
* installing *source* package 'TCGAWorkflow' ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'SummarizedExperiment::as.data.frame' by 'motifStack::as.data.frame' when loading 'TCGAWorkflow'
** help
*** installing help indices
converting help for package 'TCGAWorkflow'
finding HTML links ... done
TCGAWorkflow html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'SummarizedExperiment::as.data.frame' by 'motifStack::as.data.frame' when loading 'TCGAWorkflow'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'SummarizedExperiment::as.data.frame' by 'motifStack::as.data.frame' when loading 'TCGAWorkflow'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'TCGAWorkflow' ...
** testing if installed package can be loaded
Warning: replacing previous import 'SummarizedExperiment::as.data.frame' by 'motifStack::as.data.frame' when loading 'TCGAWorkflow'
* MD5 sums
packaged installation of 'TCGAWorkflow' as TCGAWorkflow_1.18.1.zip
* DONE (TCGAWorkflow)
* installing to library 'D:/biocbuild/bbs-3.14-bioc/R/library'
package 'TCGAWorkflow' successfully unpacked and MD5 sums checked