| Back to Workflows build report for BioC 3.14 |
This page was generated on 2022-04-11 21:00:10 -0400 (Mon, 11 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4323 |
| riesling1 | Windows Server 2019 Standard | x64 | 4.1.2 (2021-11-01) -- "Bird Hippie" | 4108 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4136 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the ExpHunterSuite package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 10/29 | Hostname | OS / Arch | INSTALL | BUILD | ||||||||
| ExpHunterSuite 1.2.0 (landing page) James Perkins
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK |  | |||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | |||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | |||||||||
| Package: ExpHunterSuite |
| Version: 1.2.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/workflows/src/contrib/ExpHunterSuite_1.2.0.tar.gz && rm -rf ExpHunterSuite.buildbin-libdir && mkdir ExpHunterSuite.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ExpHunterSuite.buildbin-libdir ExpHunterSuite_1.2.0.tar.gz && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL ExpHunterSuite_1.2.0.zip && rm ExpHunterSuite_1.2.0.tar.gz ExpHunterSuite_1.2.0.zip |
| StartedAt: 2022-04-11 15:01:50 -0400 (Mon, 11 Apr 2022) |
| EndedAt: 2022-04-11 15:02:38 -0400 (Mon, 11 Apr 2022) |
| EllapsedTime: 48.3 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/workflows/src/contrib/ExpHunterSuite_1.2.0.tar.gz && rm -rf ExpHunterSuite.buildbin-libdir && mkdir ExpHunterSuite.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ExpHunterSuite.buildbin-libdir ExpHunterSuite_1.2.0.tar.gz && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL ExpHunterSuite_1.2.0.zip && rm ExpHunterSuite_1.2.0.tar.gz ExpHunterSuite_1.2.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
39 734k 39 287k 0 0 428k 0 0:00:01 --:--:-- 0:00:01 428k
100 734k 100 734k 0 0 618k 0 0:00:01 0:00:01 --:--:-- 618k
install for i386
* installing *source* package 'ExpHunterSuite' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'ExpHunterSuite'
finding HTML links ... done
STC html
acc html
catched_pairwise_termsim html
check_results html
check_results_list html
degh_output html
degsynth html
enrich_GSEA html
enrich_all_customs html
enrich_clusters_with_gmt html
enrichment_ORA html
enrichment_clusters_ORA html
exists_enrich_df html
exists_graph_file html
extract_from_cm html
fcfunc html
fmeasure html
functional_hunter html
get_organismID_byOnto html
get_organism_table html
get_stats html
get_stats_from_cm html
get_unexported_function html
graph_file_name html
ht2logFCPlot html
id_translation_orgdb html
install_DEgenes_hunter html
load_WGCNA_results html
load_and_parse_gmt html
load_hunter_folder html
load_package_result html
load_synth_dataset html
main_degenes_Hunter html
multienricher html
obtain_info_from_biomaRt html
parallel_list html
perform_GSEA_clusters html
perform_topGO html
perform_topGO_local html
ppv html
prepare_for_fortify html
recall html
rtable2measures html
scale_data_matrix html
scale_range html
spc html
target html
target_generation html
toc html
translate_id html
write_df_list_as_tables html
write_enrich_files html
write_expression_report html
write_functional_report html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'ExpHunterSuite' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ExpHunterSuite' as ExpHunterSuite_1.2.0.zip
* DONE (ExpHunterSuite)
* installing to library 'D:/biocbuild/bbs-3.14-bioc/R/library'
package 'ExpHunterSuite' successfully unpacked and MD5 sums checked