Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:07:13 -0400 (Wed, 13 Apr 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the rhdf5client package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rhdf5client.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1599/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
rhdf5client 1.16.0 (landing page) Vincent Carey
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: rhdf5client |
Version: 1.16.0 |
Command: rm -rf rhdf5client.buildbin-libdir && mkdir rhdf5client.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=rhdf5client.buildbin-libdir rhdf5client_1.16.0.tar.gz |
StartedAt: 2022-04-13 06:58:26 -0400 (Wed, 13 Apr 2022) |
EndedAt: 2022-04-13 06:59:00 -0400 (Wed, 13 Apr 2022) |
EllapsedTime: 33.6 seconds |
RetCode: 0 |
Status: OK |
PackageFile: rhdf5client_1.16.0.zip |
PackageFileSize: 1.142 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf rhdf5client.buildbin-libdir && mkdir rhdf5client.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=rhdf5client.buildbin-libdir rhdf5client_1.16.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'rhdf5client' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c extract.c -o extract.o extract.c: In function 'extractBin': extract.c:101:42: warning: 'rdp' may be used uninitialized in this function [-Wmaybe-uninitialized] A[ia] = (Rf_isReal(resvec_sexp) ? rdp[ib] : rip[ib]); ^ extract.c:101:52: warning: 'rip' may be used uninitialized in this function [-Wmaybe-uninitialized] A[ia] = (Rf_isReal(resvec_sexp) ? rdp[ib] : rip[ib]); ^ C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o rhdf5client.dll tmp.def extract.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/rhdf5client.buildbin-libdir/00LOCK-rhdf5client/00new/rhdf5client/libs/i386 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'rhdf5client' finding HTML links ... done H5S_Array-class html H5S_Array html H5S_ArraySeed-class html H5S_Matrix-class html H5S_dataset html H5S_dataset2 html H5S_source-class html HSDSArray html HSDSArraySeed html HSDSDataset-class html HSDSDataset html HSDSFile-class html HSDSFile html HSDSMatrix html HSDSSource-class html HSDSSource html HSDS_Matrix html HSDS_Matrix_OLD html URL_h5serv html URL_hsds html as html check_hsds html dataset html dim-H5S_ArraySeed-method html dim html dimnames-H5S_ArraySeed-method html dimnames html domains html dsmeta html extract_array html fetchDatasets html getData-methods html getDatasetAttrs html getDatasetSlice html getDatasetUUIDs html getDims html getHRDF html getReq html groups-methods html hsdsInfo html internalDim html links html listDatasets html listDomains-methods html rhdf5client-deprecated html rhdf5client html setPath html sproc html sub-H5S_dataset-character-character-ANY-method html sub-H5S_dataset-numeric-numeric-ANY-method html sub-HSDSDataset-numeric-ANY-ANY-method html sub-HSDSDataset-numeric-numeric-ANY-method html sub-sub html targets html transfermode html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'rhdf5client' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c extract.c -o extract.o extract.c: In function 'extractBin': extract.c:101:42: warning: 'rdp' may be used uninitialized in this function [-Wmaybe-uninitialized] A[ia] = (Rf_isReal(resvec_sexp) ? rdp[ib] : rip[ib]); ^ extract.c:101:52: warning: 'rip' may be used uninitialized in this function [-Wmaybe-uninitialized] A[ia] = (Rf_isReal(resvec_sexp) ? rdp[ib] : rip[ib]); ^ C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o rhdf5client.dll tmp.def extract.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/rhdf5client.buildbin-libdir/rhdf5client/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'rhdf5client' as rhdf5client_1.16.0.zip * DONE (rhdf5client)