| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:05:49 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the ramwas package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ramwas.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1524/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ramwas 1.18.0 (landing page) Andrey A Shabalin
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
| Package: ramwas |
| Version: 1.18.0 |
| Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:ramwas.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings ramwas_1.18.0.tar.gz |
| StartedAt: 2022-04-12 08:56:17 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 08:59:32 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 194.9 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: ramwas.Rcheck |
| Warnings: 0 |
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### Running command:
###
### /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:ramwas.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings ramwas_1.18.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.14-bioc/meat/ramwas.Rcheck’
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ramwas/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ramwas’ version ‘1.18.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ramwas’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
manhattan 7.821 0.743 8.564
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.14-bioc/meat/ramwas.Rcheck/00check.log’
for details.
ramwas.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL ramwas ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’ * installing *source* package ‘ramwas’ ... ** using staged installation ** libs gcc -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c rw_c_code.c -o rw_c_code.o gcc -shared -L/home/biocbuild/bbs-3.14-bioc/R/lib -L/usr/local/lib -o ramwas.so rw_c_code.o -L/home/biocbuild/bbs-3.14-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.14-bioc/R/library/00LOCK-ramwas/00new/ramwas/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ramwas)
ramwas.Rcheck/ramwas-Ex.timings
| name | user | system | elapsed | |
| MakeBED | 0 | 0 | 0 | |
| QCs | 0.028 | 0.000 | 0.027 | |
| cachedRDSload | 1.423 | 0.088 | 1.510 | |
| findBestNpvs | 0.001 | 0.000 | 0.001 | |
| get | 0 | 0 | 0 | |
| getCpGset | 3.375 | 0.152 | 3.532 | |
| injectSNPsMAF | 0.836 | 0.001 | 0.836 | |
| insilicoFASTQ | 0.002 | 0.000 | 0.002 | |
| isAbsolutePath | 0.001 | 0.000 | 0.001 | |
| makefullpath | 0 | 0 | 0 | |
| manhattan | 7.821 | 0.743 | 8.564 | |
| mat2cols | 0.001 | 0.000 | 0.001 | |
| orthonormalizeCovariates | 0.007 | 0.001 | 0.007 | |
| parameterDump | 0.001 | 0.001 | 0.002 | |
| parameterPreprocess | 0.004 | 0.014 | 0.031 | |
| parametersFromFile | 0.002 | 0.000 | 0.002 | |
| pipeline | 0.001 | 0.000 | 0.002 | |
| plotCV | 1.809 | 0.030 | 1.839 | |
| plotFragmentSizeDistributionEstimate | 0.018 | 0.004 | 0.023 | |
| plotPC | 0.009 | 0.001 | 0.009 | |
| processCommandLine | 0.000 | 0.000 | 0.001 | |
| pvalue2qvalue | 0.000 | 0.000 | 0.001 | |
| qqplotFast | 1.462 | 0.281 | 1.744 | |
| ramwas0createArtificialData | 0.182 | 0.005 | 0.186 | |
| ramwasAnnotateLocations | 0 | 0 | 0 | |
| ramwasParameters | 0 | 0 | 0 | |
| rowcolSumSq | 0.001 | 0.000 | 0.000 | |
| rwDataClass-class | 0.032 | 0.000 | 0.031 | |
| subsetData | 0 | 0 | 0 | |
| testPhenotype | 0.014 | 0.000 | 0.015 | |