| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:07:06 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the plotgardener package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/plotgardener.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1430/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| plotgardener 1.0.17 (landing page) Nicole Kramer
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: plotgardener |
| Version: 1.0.17 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/plotgardener_1.0.17.tar.gz && rm -rf plotgardener.buildbin-libdir && mkdir plotgardener.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=plotgardener.buildbin-libdir plotgardener_1.0.17.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL plotgardener_1.0.17.zip && rm plotgardener_1.0.17.tar.gz plotgardener_1.0.17.zip |
| StartedAt: 2022-04-12 06:34:42 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 06:38:45 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 243.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/plotgardener_1.0.17.tar.gz && rm -rf plotgardener.buildbin-libdir && mkdir plotgardener.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=plotgardener.buildbin-libdir plotgardener_1.0.17.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL plotgardener_1.0.17.zip && rm plotgardener_1.0.17.tar.gz plotgardener_1.0.17.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
44 2297k 44 1021k 0 0 1096k 0 0:00:02 --:--:-- 0:00:02 1097k
100 2297k 100 2297k 0 0 1439k 0 0:00:01 0:00:01 --:--:-- 1439k
install for i386
* installing *source* package 'plotgardener' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c checkRow.cpp -o checkRow.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rebinBigwig.cpp -o rebinBigwig.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o plotgardener.dll tmp.def RcppExports.o checkRow.o rebinBigwig.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/plotgardener.buildbin-libdir/00LOCK-plotgardener/00new/plotgardener/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'plotgardener'
finding HTML links ... done
annoDomains html
annoGenomeLabel html
annoHeatmapLegend html
annoHighlight html
annoPixels html
annoSegments html
annoText html
annoXaxis html
annoYaxis html
annoZoomLines html
assembly html
c html
colorby html
defaultPackages html
genomes html
mapColors html
pageCreate html
pageGuideHide html
pageGuideHorizontal html
pageGuideShow html
pageGuideVertical html
pagePlotPlace html
pagePlotRemove html
pgParams html
plotCircle html
plotGG html
plotGenes html
plotGenomeLabel html
plotHicRectangle html
plotHicSquare html
plotHicTriangle html
plotIdeogram html
plotLegend html
plotManhattan html
plotPairs html
plotPairsArches html
plotPolygon html
plotRanges html
plotRaster html
plotRect html
plotSegments html
plotSignal html
plotText html
plotTranscripts html
plotgardener html
readBigwig html
readHic html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'plotgardener' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c checkRow.cpp -o checkRow.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rebinBigwig.cpp -o rebinBigwig.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o plotgardener.dll tmp.def RcppExports.o checkRow.o rebinBigwig.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/plotgardener.buildbin-libdir/plotgardener/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'plotgardener' as plotgardener_1.0.17.zip
* DONE (plotgardener)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'plotgardener' successfully unpacked and MD5 sums checked