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This page was generated on 2022-04-13 12:06:54 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for minfi on tokay2


To the developers/maintainers of the minfi package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/minfi.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1156/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
minfi 1.40.0  (landing page)
Kasper Daniel Hansen
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/minfi
git_branch: RELEASE_3_14
git_last_commit: 17fa2b5
git_last_commit_date: 2021-10-26 12:00:45 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: minfi
Version: 1.40.0
Command: rm -rf minfi.buildbin-libdir && mkdir minfi.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=minfi.buildbin-libdir minfi_1.40.0.tar.gz
StartedAt: 2022-04-13 06:36:43 -0400 (Wed, 13 Apr 2022)
EndedAt: 2022-04-13 06:38:12 -0400 (Wed, 13 Apr 2022)
EllapsedTime: 88.9 seconds
RetCode: 0
Status:   OK  
PackageFile: minfi_1.40.0.zip
PackageFileSize: 1.663 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf minfi.buildbin-libdir && mkdir minfi.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=minfi.buildbin-libdir minfi_1.40.0.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'minfi' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'minfi'
    finding HTML links ... done
    DelayedArray_utils                      html  
    GenomicMethylSet-class                  html  
    GenomicRatioSet-class                   html  
    IlluminaMethylationAnnotation-class     html  
    IlluminaMethylationManifest-class       html  
    MethylSet-class                         html  
    finding level-2 HTML links ... done

    RGChannelSet-class                      html  
    RatioSet-class                          html  
    blockFinder                             html  
    bumphunter                              html  
    combineArrays                           html  
    compartments                            html  
    controlStripPlot                        html  
    convertArray                            html  
    cpgCollapse                             html  
    densityBeanPlot                         html  
    densityPlot                             html  
    detectionP                              html  
    dmpFinder                               html  
    estimateCellCounts                      html  
    fixMethOutliers                         html  
    gaphunter                               html  
    getAnnotation                           html  
    getGenomicRatioSetFromGEO               html  
    getQC                                   html  
    getSex                                  html  
    logit2                                  html  
    makeGenomicRatioSetFromMatrix           html  
    mapToGenome-methods                     html  
    mdsPlot                                 html  
    minfi-defunct                           html  
    minfi-deprecated                        html  
    minfi-package                           html  
    minfiQC                                 html  
    plotBetasByType                         html  
    plotCpg                                 html  
    preprocessFunnorm                       html  
    preprocessIllumina                      html  
    preprocessNoob                          html  
    preprocessQuantile                      html  
    preprocessRaw                           html  
    preprocessSwan                          html  
    qcReport                                html  
    ratioConvert-methods                    html  
    read.metharray                          html  
    read.metharray.exp                      html  
    read.metharray.sheet                    html  
    readGEORawFile                          html  
    readTCGA                                html  
    subsetByLoci                            html  
    utils                                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'minfi' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'minfi' as minfi_1.40.0.zip
* DONE (minfi)