| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:08:11 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the impute package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/impute.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 929/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| impute 1.68.0 (landing page) Balasubramanian Narasimhan
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: impute |
| Version: 1.68.0 |
| Command: rm -rf impute.buildbin-libdir && mkdir impute.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh impute_1.68.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R impute.buildbin-libdir |
| StartedAt: 2022-04-12 20:53:48 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 20:53:54 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 5.1 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: impute_1.68.0.tgz |
| PackageFileSize: 644.9 KiB |
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### Running command:
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### rm -rf impute.buildbin-libdir && mkdir impute.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh impute_1.68.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R impute.buildbin-libdir
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>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=impute.buildbin-libdir impute_1.68.0.tar.gz'
>>>>>>>
* installing *source* package ‘impute’ ...
** using staged installation
** libs
gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c knnimpute.f -o knnimpute.o
f951: Warning: Nonconforming tab character in column 1 of line 89 [-Wtabs]
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f951: Warning: Nonconforming tab character in column 1 of line 122 [-Wtabs]
knnimpute.f:168:0:
ratio=dabs(dnew-dold)/dold
Warning: ‘dold’ may be used uninitialized in this function [-Wmaybe-uninitialized]
clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o impute.so knnimpute.o -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.14-bioc/meat/impute.buildbin-libdir/00LOCK-impute/00new/impute/libs
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (impute)
>>>>>>>
>>>>>>> FIXING LINKS FOR impute.buildbin-libdir/impute/libs/impute.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgcc_s.1.dylib" "impute.buildbin-libdir/impute/libs/impute.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgfortran.5.dylib" "impute.buildbin-libdir/impute/libs/impute.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib" "impute.buildbin-libdir/impute/libs/impute.so"
install_name_tool -change "/usr/local/gfortran/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgfortran.5.dylib" "impute.buildbin-libdir/impute/libs/impute.so"
install_name_tool -change "/usr/local/gfortran/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib" "impute.buildbin-libdir/impute/libs/impute.so"