Jennifer Tom
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/genotypeeval |
| git_branch: RELEASE_3_14 |
| git_last_commit: 14bef66 |
| git_last_commit_date: 2021-10-26 12:21:35 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:06:37 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the genotypeeval package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/genotypeeval.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 760/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| genotypeeval 1.26.0 (landing page) Jennifer Tom
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: genotypeeval |
| Version: 1.26.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/genotypeeval_1.26.0.tar.gz && rm -rf genotypeeval.buildbin-libdir && mkdir genotypeeval.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=genotypeeval.buildbin-libdir genotypeeval_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL genotypeeval_1.26.0.zip && rm genotypeeval_1.26.0.tar.gz genotypeeval_1.26.0.zip |
| StartedAt: 2022-04-12 07:03:42 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 07:06:08 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 146.3 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/genotypeeval_1.26.0.tar.gz && rm -rf genotypeeval.buildbin-libdir && mkdir genotypeeval.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=genotypeeval.buildbin-libdir genotypeeval_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL genotypeeval_1.26.0.zip && rm genotypeeval_1.26.0.tar.gz genotypeeval_1.26.0.zip
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install for i386
* installing *source* package 'genotypeeval' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'genotypeeval'
finding HTML links ... done
GoldData-class html
GoldDataFromGRanges html
GoldDataParam-class html
GoldDataParam html
ReadGoldData html
ReadVCFData html
ReadVCFDataChunk html
VCFData-class html
VCFEvaluate html
VCFQAParam-class html
VCFQAParam html
VCFQAReport-class html
XHeterozygosity html
admixture html
callbyChrPlot html
calltypePlot html
chunkData html
computeTiTv html
didSamplePass html
didSamplePassOverall html
genotypeQualityPlot html
getCoefs html
getDescriptors html
getName html
getPlots html
getResults html
getVR html
goldCompare html
hetGap html
hetsMasked html
homrefPlot html
meanGQ html
myf html
numberCalls html
numberOfHets html
numberOfHomRefs html
numberOfHomVars html
percentHets html
percentInTarget html
rareCompare html
readDepth html
readVcfGold html
readdepthPlot html
reformatData html
titv html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'genotypeeval' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'genotypeeval' as genotypeeval_1.26.0.zip
* DONE (genotypeeval)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'genotypeeval' successfully unpacked and MD5 sums checked