| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:06:24 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the cTRAP package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cTRAP.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 429/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| cTRAP 1.12.0 (landing page) Nuno Saraiva-Agostinho
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: cTRAP |
| Version: 1.12.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/cTRAP_1.12.0.tar.gz && rm -rf cTRAP.buildbin-libdir && mkdir cTRAP.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cTRAP.buildbin-libdir cTRAP_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL cTRAP_1.12.0.zip && rm cTRAP_1.12.0.tar.gz cTRAP_1.12.0.zip |
| StartedAt: 2022-04-12 06:54:35 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 06:57:17 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 161.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/cTRAP_1.12.0.tar.gz && rm -rf cTRAP.buildbin-libdir && mkdir cTRAP.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cTRAP.buildbin-libdir cTRAP_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL cTRAP_1.12.0.zip && rm cTRAP_1.12.0.tar.gz cTRAP_1.12.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
0 3967k 0 39067 0 0 249k 0 0:00:15 --:--:-- 0:00:15 249k
21 3967k 21 863k 0 0 751k 0 0:00:05 0:00:01 0:00:04 751k
40 3967k 40 1600k 0 0 744k 0 0:00:05 0:00:02 0:00:03 744k
73 3967k 73 2912k 0 0 925k 0 0:00:04 0:00:03 0:00:01 925k
100 3967k 100 3967k 0 0 1082k 0 0:00:03 0:00:03 --:--:-- 1082k
install for i386
* installing *source* package 'cTRAP' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'cTRAP'
finding HTML links ... done
ENCODEmetadata html
GCT-class html
HTMLfast html
analyseDrugSetEnrichment html
as.table.referenceComparison html
cTRAP html
calculateCellLineMean html
calculateEvenlyDistributedBins html
checkColnames html
chunkColumns html
closeOpenHandles html
cmapMetadata html
cmapPerturbationsCompounds html
cmapPerturbationsKD html
compareQuantile html
compareWithAllMethods html
convertENSEMBLtoGeneSymbols html
convertGeneIdentifiers html
counts html
diffExprStat html
dimnames.expressionDrugSensitivityAssociation
html
dot-plotBubbles html
dot-prepareNavPage html
dot-traceInList html
downloadENCODEknockdownMetadata html
downloadIfNotFound html
filterCMapMetadata html
findIntersectingCompounds html
fix.datatypes html
getCMapConditions html
getCMapPerturbationTypes html
getENCODEcontrols html
launchCMapDataLoader html
launchDiffExprLoader html
launchDrugSetEnrichmentAnalyser html
launchMetadataViewer html
launchResultPlotter html
listExpressionDrugSensitivityAssociation
html
loadCMapData html
loadCMapZscores html
loadCTRPgeneExpression html
loadDrugDescriptors html
loadENCODEsample html
loadENCODEsamples html
loadExpressionDrugSensitivityAssociation
html
loadNCI60drugSensitivity html
matchStatsWithDrugSetsID html
parseCMapID html
performDifferentialExpression html
performGSEA html
plot.perturbationChanges html
plot.referenceComparison html
plotDrugSetEnrichment html
plotESplot html
plotGSEA html
plotMetricDistribution html
plotSingleCorr html
plotTargetingDrugsVSsimilarPerturbations
html
predictTargetingDrugs html
prepareCMapPerturbations html
prepareDrugSets html
prepareENCODEgeneExpression html
prepareExpressionDrugSensitivityAssociation
html
prepareGSEAgenesets html
prepareSetsCompoundInfo html
prepareStatsCompoundInfo html
prepareWordBreak html
print.similarPerturbations html
processByChunks html
processIds html
rankAgainstReference html
rankColumns html
rankSimilarPerturbations html
readGctxIds html
readGctxMeta html
stripStr html
subsetData html
subsetDim html
subsetToIds html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'cTRAP' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'cTRAP' as cTRAP_1.12.0.zip
* DONE (cTRAP)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'cTRAP' successfully unpacked and MD5 sums checked