| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:06:08 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the affyPara package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/affyPara.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 31/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Markus Schmidberger
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | ERROR | ERROR | skipped | skipped | |||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | ERROR | ERROR | skipped | skipped | |||||||||
| Package: affyPara |
| Version: 1.54.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/affyPara_1.54.0.tar.gz && rm -rf affyPara.buildbin-libdir && mkdir affyPara.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=affyPara.buildbin-libdir affyPara_1.54.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL affyPara_1.54.0.zip && rm affyPara_1.54.0.tar.gz affyPara_1.54.0.zip |
| StartedAt: 2022-04-12 04:58:41 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 04:59:13 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 31.3 seconds |
| RetCode: 1 |
| Status: ERROR |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/affyPara_1.54.0.tar.gz && rm -rf affyPara.buildbin-libdir && mkdir affyPara.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=affyPara.buildbin-libdir affyPara_1.54.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL affyPara_1.54.0.zip && rm affyPara_1.54.0.tar.gz affyPara_1.54.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
4 259k 4 13289 0 0 11868 0 0:00:22 0:00:01 0:00:21 11875
72 259k 72 187k 0 0 151k 0 0:00:01 0:00:01 --:--:-- 151k
100 259k 100 259k 0 0 204k 0 0:00:01 0:00:01 --:--:-- 204k
install for i386
* installing *source* package 'affyPara' ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'affyPara'
finding HTML links ... done
MAplotPara html
bgcPara html
boxplotPara html
class.vsnInputPara html
computeExprSetPara html
distributeFiles html
mergeSplitObjects html
normalizeAffyBatchConstantPara html
normalizeAffyBatchInvariantsetPara html
normalizeAffyBatchLoessPara html
normalizeAffyBatchLoessParaIter html
normalizeAffyBatchQuantilesPara html
preproPara html
qa html
readAffybatchPara html
removeDistributedFiles html
rmaPara html
snowReplace html
split html
vsnPara html
finding level-2 HTML links ... done
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Error: package or namespace load failed for 'affyPara':
.onLoad failed in loadNamespace() for 'affyPara', details:
call: assign(".affyParaInternalEnv", .affyParaInternalEnv, envir = topenv(parent.frame()))
error: cannot add binding of '.affyParaInternalEnv' to the base environment
Error: loading failed
Execution halted
ERROR: loading failed
* removing 'C:/Users/biocbuild/bbs-3.14-bioc/meat/affyPara.buildbin-libdir/affyPara'