Guillem Rigaill
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/ITALICS |
| git_branch: RELEASE_3_14 |
| git_last_commit: 108e69a |
| git_last_commit_date: 2021-10-26 11:52:42 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:06:46 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the ITALICS package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ITALICS.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 967/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ITALICS 2.54.0 (landing page) Guillem Rigaill
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: ITALICS |
| Version: 2.54.0 |
| Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ITALICS.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings ITALICS_2.54.0.tar.gz |
| StartedAt: 2022-04-12 21:46:22 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 21:50:05 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 222.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: ITALICS.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ITALICS.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings ITALICS_2.54.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/ITALICS.Rcheck' * using R version 4.1.3 (2022-03-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'ITALICS/DESCRIPTION' ... OK * this is package 'ITALICS' version '2.54.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'ITALICS' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. Packages listed in more than one of Depends, Imports, Suggests, Enhances: 'affxparser' 'GLAD' 'oligo' A package should be listed in only one of these fields. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Packages in Depends field not imported from: 'ITALICSData' 'pd.mapping50k.xba240' These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE trainITALICS: warning in list.files(dir, full.name = TRUE): partial argument match of 'full.name' to 'full.names' * checking Rd files ... NOTE prepare_Rd: GLAD.GLAD.Rd:33: Dropping empty section \keyword prepare_Rd: ITALICSNew.Rd:82: Dropping empty section \keyword prepare_Rd: ITALICSTrain.Rd:43: Dropping empty section \keyword prepare_Rd: Model.GetConfDat.Rd:23: Dropping empty section \keyword prepare_Rd: Model.GetCorrection.Rd:20: Dropping empty section \keyword prepare_Rd: Model.GetEffet.Rd:20: Dropping empty section \keyword prepare_Rd: Model.GetModel.Rd:21: Dropping empty section \keyword prepare_Rd: Model.GetResidu.Rd:18: Dropping empty section \keyword prepare_Rd: New.AddInfo.Rd:24: Dropping empty section \keyword prepare_Rd: New.fromQuartetToSnp.Rd:31: Dropping empty section \keyword prepare_Rd: New.fromQuartetToSnp.Rd:25: Dropping empty section \examples prepare_Rd: New.fromSnpToQuartet.Rd:25: Dropping empty section \keyword prepare_Rd: New.getQuartet.Rd:27: Dropping empty section \keyword prepare_Rd: New.getSnpInfo.Rd:25: Dropping empty section \keyword prepare_Rd: New.readQuartetCopyNb.Rd:23: Dropping empty section \keyword * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 4 NOTEs See 'C:/Users/biocbuild/bbs-3.14-bioc/meat/ITALICS.Rcheck/00check.log' for details.
ITALICS.Rcheck/00install.out
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###
### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/ITALICS_2.54.0.tar.gz && rm -rf ITALICS.buildbin-libdir && mkdir ITALICS.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ITALICS.buildbin-libdir ITALICS_2.54.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL ITALICS_2.54.0.zip && rm ITALICS_2.54.0.tar.gz ITALICS_2.54.0.zip
###
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install for i386
* installing *source* package 'ITALICS' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'ITALICS'
finding HTML links ... done
GLAD.GLAD html
ITALICSNew html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/ITALICS.buildbin-libdir/00LOCK-ITALICS/00new/ITALICS/help/Italics.html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/ITALICS.buildbin-libdir/00LOCK-ITALICS/00new/ITALICS/help/italics.html
ITALICSTrain html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/ITALICS.buildbin-libdir/00LOCK-ITALICS/00new/ITALICS/help/trainItalics.html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/ITALICS.buildbin-libdir/00LOCK-ITALICS/00new/ITALICS/help/trainitalics.html
Model.GetConfDat html
Model.GetCorrection html
Model.GetEffet html
Model.GetModel html
Model.GetResidu html
New.AddInfo html
New.fromQuartetToSnp html
New.fromSnpToQuartet html
New.getQuartet html
New.getSnpInfo html
New.readQuartetCopyNb html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'ITALICS' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ITALICS' as ITALICS_2.54.0.zip
* DONE (ITALICS)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'ITALICS' successfully unpacked and MD5 sums checked
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ITALICS.Rcheck/examples_i386/ITALICS-Ex.timings
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ITALICS.Rcheck/examples_x64/ITALICS-Ex.timings
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