| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:06:35 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the GA4GHclient package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GA4GHclient.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 691/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| GA4GHclient 1.18.0 (landing page) Welliton Souza
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: GA4GHclient |
| Version: 1.18.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/GA4GHclient_1.18.0.tar.gz && rm -rf GA4GHclient.buildbin-libdir && mkdir GA4GHclient.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GA4GHclient.buildbin-libdir GA4GHclient_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL GA4GHclient_1.18.0.zip && rm GA4GHclient_1.18.0.tar.gz GA4GHclient_1.18.0.zip |
| StartedAt: 2022-04-12 06:57:45 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 06:59:27 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 101.6 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/GA4GHclient_1.18.0.tar.gz && rm -rf GA4GHclient.buildbin-libdir && mkdir GA4GHclient.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GA4GHclient.buildbin-libdir GA4GHclient_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL GA4GHclient_1.18.0.zip && rm GA4GHclient_1.18.0.tar.gz GA4GHclient_1.18.0.zip
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install for i386
* installing *source* package 'GA4GHclient' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
No methods found in package 'BiocGenerics' for request: 'lengths' when loading 'GA4GHclient'
** help
*** installing help indices
converting help for package 'GA4GHclient'
finding HTML links ... done
GA4GHclient-package html
HGVSnames html
getBiosample html
finding level-2 HTML links ... done
getCallSet html
getDataset html
getExpressionLevel html
getFeature html
getFeatureSet html
getIndividual html
getReadGroupSet html
getReference html
getReferenceSet html
getRnaQuantification html
getRnaQuantificationSet html
getVariant html
getVariantAnnotationSet html
getVariantSet html
listReferenceBases html
makeVCFFromGA4GHResponse html
makeVCFHeaderFromGA4GHResponse html
searchBiosamples html
searchCallSets html
searchDatasets html
searchExpressionLevels html
searchFeatureSets html
searchFeatures html
searchIndividuals html
searchPhenotypeAssociationSets html
searchPhenotypeAssociations html
searchReadGroupSets html
searchReads html
searchReferenceSets html
searchReferences html
searchRnaQuantificationSets html
searchRnaQuantifications html
searchVariantAnnotationSets html
searchVariantAnnotations html
searchVariantSets html
searchVariants html
searchVariantsByGRanges html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package 'BiocGenerics' for request: 'lengths' when loading 'GA4GHclient'
** testing if installed package can be loaded from final location
No methods found in package 'BiocGenerics' for request: 'lengths' when loading 'GA4GHclient'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'GA4GHclient' ...
** testing if installed package can be loaded
No methods found in package 'BiocGenerics' for request: 'lengths' when loading 'GA4GHclient'
* MD5 sums
packaged installation of 'GA4GHclient' as GA4GHclient_1.18.0.zip
* DONE (GA4GHclient)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'GA4GHclient' successfully unpacked and MD5 sums checked