| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:05:16 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the DelayedTensor package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DelayedTensor.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 481/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| DelayedTensor 1.0.0 (landing page) Koki Tsuyuzaki
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: DelayedTensor |
| Version: 1.0.0 |
| Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:DelayedTensor.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings DelayedTensor_1.0.0.tar.gz |
| StartedAt: 2022-04-12 07:07:24 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 07:12:12 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 288.3 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: DelayedTensor.Rcheck |
| Warnings: 1 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:DelayedTensor.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings DelayedTensor_1.0.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.14-bioc/meat/DelayedTensor.Rcheck’
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘DelayedTensor/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘DelayedTensor’ version ‘1.0.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘DelayedTensor’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... WARNING
Note: significantly better compression could be obtained
by using R CMD build --resave-data
old_size new_size compress
human_mid_brain.rda 677Kb 442Kb xz
mouse_mid_brain.rda 761Kb 511Kb xz
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
cp 108.005 3.031 111.938
tucker 15.475 0.524 16.012
mpca 7.031 0.188 7.239
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING
See
‘/home/biocbuild/bbs-3.14-bioc/meat/DelayedTensor.Rcheck/00check.log’
for details.
DelayedTensor.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL DelayedTensor ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’ * installing *source* package ‘DelayedTensor’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘kronecker’ in package ‘DelayedTensor’ Creating a new generic function for ‘diag’ in package ‘DelayedTensor’ Creating a new generic function for ‘diag<-’ in package ‘DelayedTensor’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DelayedTensor)
DelayedTensor.Rcheck/tests/testthat.Rout
R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library("DelayedArray")
Loading required package: stats4
Loading required package: Matrix
Loading required package: BiocGenerics
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which.max, which.min
Loading required package: MatrixGenerics
Loading required package: matrixStats
Attaching package: 'MatrixGenerics'
The following objects are masked from 'package:matrixStats':
colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse,
colCounts, colCummaxs, colCummins, colCumprods, colCumsums,
colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs,
colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats,
colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds,
colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads,
colWeightedMeans, colWeightedMedians, colWeightedSds,
colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet,
rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods,
rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps,
rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins,
rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks,
rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars,
rowWeightedMads, rowWeightedMeans, rowWeightedMedians,
rowWeightedSds, rowWeightedVars
Loading required package: S4Vectors
Attaching package: 'S4Vectors'
The following objects are masked from 'package:Matrix':
expand, unname
The following objects are masked from 'package:base':
I, expand.grid, unname
Loading required package: IRanges
Attaching package: 'DelayedArray'
The following objects are masked from 'package:base':
aperm, apply, rowsum, scale, sweep
> # library("HDF5Array") # comment out
> # library("BiocSingular") # comment out
> library("rTensor")
Attaching package: 'rTensor'
The following object is masked from 'package:S4Vectors':
fold
> library("DelayedRandomArray")
> # library("irlba") # comment out
> # library("Matrix") # comment out
> library("einsum")
> library("DelayedTensor")
Attaching package: 'DelayedTensor'
The following object is masked from 'package:einsum':
einsum
The following objects are masked from 'package:rTensor':
cp, cs_fold, cs_unfold, fnorm, fold, hadamard_list, hosvd,
innerProd, k_fold, k_unfold, khatri_rao, khatri_rao_list,
kronecker_list, matvec, modeMean, modeSum, mpca, pvd, rs_fold,
rs_unfold, ttl, ttm, tucker, unfold, unmatvec, vec
The following object is masked from 'package:S4Vectors':
fold
The following objects are masked from 'package:Matrix':
diag, diag<-, kronecker
The following object is masked from 'package:methods':
kronecker
The following objects are masked from 'package:base':
diag, diag<-, kronecker
> library("reticulate")
> library("testthat")
> library("HDF5Array")
Loading required package: rhdf5
Attaching package: 'HDF5Array'
The following object is masked from 'package:rhdf5':
h5ls
>
> # Setting
> options(testthat.use_colours = FALSE)
> options(delayedtensor.sparse = FALSE)
> options(delayedtensor.verbose = FALSE)
> setHDF5DumpCompressionLevel(level=9L)
> source("testthat/test_Einsum_objects.R")
>
> # source("../R/Decomp.R") # comment out
> # source("../R/Einsum.R") # comment out
> # source("../R/Generics.R") # comment out
> # source("../R/Global-settings.R") # comment out
> # source("../R/Misc.R") # comment out
> # source("../R/SVD.R") # comment out
> # source("../R/Utils.R") # comment out
> # source("../R/zzz.R") # comment out
>
> # for(size in c(1E+9,1E+8,1E+7,1E+6,1E+5,1E+4,1E+3,1E+2,50,20:1)){ # comment out
> # setAutoBlockSize(size=size) # comment out
> # getAutoBlockSize() # comment out
> test_file("testthat/test_Generics.R")
══ Testing test_Generics.R ═════════════════════════════════════════════════════
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 2 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 3 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 5 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 6 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 6 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 7 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 8 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 9 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 9 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 10 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 10 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 11 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 12 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 13 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 13 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 14 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 15 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 16 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 16 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 17 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 18 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 19 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 20 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 21 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 22 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 22 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 23 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 25 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 26 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 27 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 28 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 28 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 29 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 29 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 30 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 30 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 31 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 31 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 32 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 32 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 33 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 33 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 34 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 34 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 35 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 35 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 36 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 36 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 37 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 37 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 38 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 38 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 39 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 39 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 40 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 40 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 41 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 41 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 42 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 42 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 43 ] Done!
> test_file("testthat/test_Misc.R")
══ Testing test_Misc.R ═════════════════════════════════════════════════════════
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 2 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 2 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 3 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 3 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 5 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 5 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 6 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 7 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 7 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 8 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 8 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 9 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 10 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 11 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 12 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 13 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 14 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 15 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 16 ] Done!
> # test_file("testthat/test_SVD.R") # comment out
> test_file("testthat/test_4thorder.R")
══ Testing test_4thorder.R ═════════════════════════════════════════════════════
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ][1] "unfold"
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 2 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 3 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 5 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 6 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 7 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 7 ][1] "modeSum"
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 8 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 9 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 10 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 11 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 12 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 13 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 14 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 15 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 15 ][1] "innerProd"
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 16 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 16 ][1] "vec"
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 17 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 17 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 18 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 18 ][1] "fold"
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 19 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 20 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 21 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 22 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 22 ][1] "diag"
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 23 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 23 ][1] "diag"
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ][1] "DelayedDiagonalArray"
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 25 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 26 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 27 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 28 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 29 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 30 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 31 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 32 ] Done!
> test_file("testthat/test_Einsum.R")
══ Testing test_Einsum.R ═══════════════════════════════════════════════════════
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 2 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 3 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 5 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 6 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 7 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 8 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 9 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 10 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 11 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 12 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 13 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 14 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 15 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 16 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 17 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 18 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 19 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 20 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 21 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 22 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 23 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 25 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 26 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 27 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 28 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 29 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 29 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 30 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 31 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 32 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 33 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 34 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 35 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 36 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 37 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 38 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 39 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 40 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 41 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 42 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 43 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 44 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 45 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 46 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 47 ]
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[ FAIL 0 | WARN 0 | SKIP 0 | PASS 49 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 50 ]
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[ FAIL 0 | WARN 0 | SKIP 0 | PASS 53 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 54 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 55 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 56 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 57 ]
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[ FAIL 0 | WARN 0 | SKIP 0 | PASS 109 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 110 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 111 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 112 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 113 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 114 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 115 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 116 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 117 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 118 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 119 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 120 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 121 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 122 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 123 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 124 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 125 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 126 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 127 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 128 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 129 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 130 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 131 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 132 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 133 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 134 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 135 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 136 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 137 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 138 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 139 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 140 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 141 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 142 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 143 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 144 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 145 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 146 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 147 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 148 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 149 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 150 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 151 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 152 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 153 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 154 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 155 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 156 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 157 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 158 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 159 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 160 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 160 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 161 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 162 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 163 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 164 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 165 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 166 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 167 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 168 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 169 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 170 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 171 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 172 ] Done!
> # gc();gc() # comment out
> # } # comment out
>
> # setAutoBlockSize(size=1E+8)
> # test_file("testthat/test_Decomp.R")
> # test_file("testthat/test_Einsum_Py.R") # comment out
> # source("testthat/test_Verbose.R")
> # source("testthat/test_Sparse.R")
>
> # Profiling
> # source("testthat/test_SuperBig.R") # comment out
>
> proc.time()
user system elapsed
33.592 1.236 34.819
DelayedTensor.Rcheck/DelayedTensor-Ex.timings
| name | user | system | elapsed | |
| DelayedDiagonalArray | 0.048 | 0.001 | 0.048 | |
| DelayedTensor-package | 0 | 0 | 0 | |
| cbind_list | 0.449 | 0.024 | 0.475 | |
| cp | 108.005 | 3.031 | 111.938 | |
| cs_fold | 0.307 | 0.008 | 0.316 | |
| cs_unfold | 0.227 | 0.000 | 0.227 | |
| diag | 0.375 | 0.008 | 0.384 | |
| einsum | 0.780 | 0.012 | 0.793 | |
| fnorm | 0.095 | 0.004 | 0.098 | |
| fold | 0.378 | 0.000 | 0.378 | |
| getSparse | 0 | 0 | 0 | |
| getVerbose | 0 | 0 | 0 | |
| hadamard | 0.184 | 0.000 | 0.184 | |
| hadamard_list | 0.197 | 0.000 | 0.197 | |
| hosvd | 2.418 | 0.064 | 2.483 | |
| human_mid_brain | 0.003 | 0.000 | 0.002 | |
| innerProd | 0.092 | 0.000 | 0.092 | |
| k_fold | 0.379 | 0.004 | 0.382 | |
| k_unfold | 0.227 | 0.000 | 0.228 | |
| khatri_rao | 0.18 | 0.00 | 0.18 | |
| khatri_rao_list | 0.179 | 0.012 | 0.191 | |
| kronecker | 0.095 | 0.000 | 0.095 | |
| kronecker_list | 0.193 | 0.008 | 0.201 | |
| list_rep | 0.190 | 0.000 | 0.191 | |
| matvec | 0.265 | 0.000 | 0.265 | |
| modeMean | 1.034 | 0.024 | 1.058 | |
| modeSum | 0.841 | 0.012 | 0.853 | |
| modebind_list | 0.844 | 0.016 | 0.860 | |
| mouse_mid_brain | 0.001 | 0.000 | 0.001 | |
| mpca | 7.031 | 0.188 | 7.239 | |
| outerProd | 0.237 | 0.004 | 0.241 | |
| pvd | 4.076 | 0.064 | 4.140 | |
| rbind_list | 0.325 | 0.000 | 0.326 | |
| rs_fold | 0.369 | 0.002 | 0.370 | |
| rs_unfold | 0.193 | 0.004 | 0.197 | |
| setSparse | 0.001 | 0.000 | 0.000 | |
| setVerbose | 0 | 0 | 0 | |
| ttl | 0.719 | 0.016 | 0.734 | |
| ttm | 0.497 | 0.016 | 0.514 | |
| tucker | 15.475 | 0.524 | 16.012 | |
| unfold | 0.191 | 0.004 | 0.194 | |
| unmatvec | 0.345 | 0.012 | 0.356 | |
| vec | 0.149 | 0.000 | 0.149 | |