Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-04-13 12:06:15 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for BiSeq on tokay2


To the developers/maintainers of the BiSeq package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BiSeq.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 199/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BiSeq 1.34.0  (landing page)
Katja Hebestreit
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/BiSeq
git_branch: RELEASE_3_14
git_last_commit: 5d4449a
git_last_commit_date: 2021-10-26 12:07:58 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: BiSeq
Version: 1.34.0
Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe --arch x64 CMD INSTALL --no-multiarch BiSeq
StartedAt: 2022-04-12 06:32:26 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 06:34:01 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 95.6 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
###
###   C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe --arch x64 CMD INSTALL --no-multiarch BiSeq
###
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* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
* installing *source* package 'BiSeq' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'BiSeq'
    finding HTML links ... done
    BSraw-class                             html  
    finding level-2 HTML links ... done

    BSrel-class                             html  
    DMRs                                    html  
    annotateGRanges                         html  
    betaRegression                          html  
    betaResults                             html  
    betaResultsNull                         html  
    binomLikelihoodSmooth                   html  
    clusterSites                            html  
    clusterSitesToGR                        html  
    compareTwoSamples                       html  
    covBoxplots                             html  
    covStatistics                           html  
    estLocCor                               html  
    filterByCov                             html  
    filterBySharedRegions                   html  
    findDMRs                                html  
    globalTest                              html  
    limitCov                                html  
    logisticRegression                      html  
    makeVariogram                           html  
    plotBindingSites                        html  
    plotMeth                                html  
    plotMethMap                             html  
    plotSmoothMeth                          html  
    predictMeth                             html  
    predictedMeth                           html  
    promoters                               html  
    rawToRel                                html  
    readBismark                             html  
    rrbs                                    html  
    smoothVariogram                         html  
    summarizeRegions                        html  
    testClusters                            html  
    trimClusters                            html  
    vario                                   html  
    writeBED                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BiSeq)
Making 'packages.html' ... done