Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-04-13 12:06:09 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for ALPS on tokay2


To the developers/maintainers of the ALPS package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ALPS.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 45/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ALPS 1.8.0  (landing page)
Venu Thatikonda
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/ALPS
git_branch: RELEASE_3_14
git_last_commit: 3dd0106
git_last_commit_date: 2021-10-26 12:55:19 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    ERROR  skipped
tokay2Windows Server 2012 R2 Standard / x64  OK    ERROR  skippedskipped
machv2macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: ALPS
Version: 1.8.0
Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe --arch x64 CMD INSTALL --no-multiarch ALPS
StartedAt: 2022-04-12 07:20:17 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 07:21:46 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 88.3 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe --arch x64 CMD INSTALL --no-multiarch ALPS
###
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* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
* installing *source* package 'ALPS' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'ALPS'
    finding HTML links ... done
    ALPS-package                            html  
    get_genomic_annotations                 html  
    get_variable_regions                    html  
    merge_GR                                html  
    multiBigwig_summary                     html  
    pipe                                    html  
    plot_browser_tracks                     html  
    plot_correlation                        html  
    plot_enrichments                        html  
    plot_genomic_annotations                html  
    plot_motif_logo                         html  
    process_homer                           html  
    process_jaspar                          html  
    process_meme                            html  
    process_pfm                             html  
    process_transfac                        html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'ALPS' is deprecated and will be removed from Bioconductor
  version 3.15
** testing if installed package can be loaded from final location
Warning: Package 'ALPS' is deprecated and will be removed from Bioconductor
  version 3.15
** testing if installed package keeps a record of temporary installation path
* DONE (ALPS)
Making 'packages.html' ... done