Thomas Girke
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/systemPipeR |
| git_branch: RELEASE_3_13 |
| git_last_commit: 08593cd |
| git_last_commit_date: 2021-06-26 12:23:40 -0400 (Sat, 26 Jun 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:25 -0400 (Fri, 15 Oct 2021).
|
To the developers/maintainers of the systemPipeR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/systemPipeR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1888/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| systemPipeR 1.26.3 (landing page) Thomas Girke
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: systemPipeR |
| Version: 1.26.3 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/systemPipeR_1.26.3.tar.gz && rm -rf systemPipeR.buildbin-libdir && mkdir systemPipeR.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=systemPipeR.buildbin-libdir systemPipeR_1.26.3.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL systemPipeR_1.26.3.zip && rm systemPipeR_1.26.3.tar.gz systemPipeR_1.26.3.zip |
| StartedAt: 2021-10-14 10:32:06 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 10:34:26 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 140.0 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/systemPipeR_1.26.3.tar.gz && rm -rf systemPipeR.buildbin-libdir && mkdir systemPipeR.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=systemPipeR.buildbin-libdir systemPipeR_1.26.3.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL systemPipeR_1.26.3.zip && rm systemPipeR_1.26.3.tar.gz systemPipeR_1.26.3.zip
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install for i386
* installing *source* package 'systemPipeR' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'systemPipeR'
finding HTML links ... done
EnvModules-class html
GOHyperGAll html
INTERSECTset-class html
ParamFiles html
SPRdata html
SYSargs-class html
SYSargs2-class html
SYSargsList-class html
SYSargsList html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/systemPipeR.buildbin-libdir/00LOCK-systemPipeR/00new/systemPipeR/help/SYSargsList.html
VENNset-class html
add-methods html
alignStats html
catDB-class html
catmap html
check.output html
clusterRun html
config.param html
configWF html
countRangeset html
createParamFiles html
evalCode html
featureCoverage html
featuretypeCounts html
filterDEGs html
filterVars html
genFeatures html
getQsubargs html
initWF html
loadWorkflow html
mergeBamByFactor html
moduleload html
olBarplot html
olRanges html
output_update html
overLapper html
plotWF html
plotfeatureCoverage html
plotfeaturetypeCounts html
predORF html
preprocessReads html
qsubRun html
readComp html
renderReport html
renderWF html
returnRPKM html
runCommandline html
runDiff html
runWF html
run_DESeq2 html
run_edgeR html
scaleRanges html
seeFastq html
subsetWF html
symLink2bam html
sysargs html
systemArgs html
systemPipeR-package html
targets.as.df html
tryCL html
tryPath html
variantReport html
vennPlot html
writeTargetsRef html
writeTargetsout html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'systemPipeR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'systemPipeR' as systemPipeR_1.26.3.zip
* DONE (systemPipeR)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'systemPipeR' successfully unpacked and MD5 sums checked