Koen Van den Berge
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/stageR |
| git_branch: RELEASE_3_13 |
| git_last_commit: f1df150 |
| git_last_commit_date: 2021-05-19 12:31:26 -0400 (Wed, 19 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:24 -0400 (Fri, 15 Oct 2021).
|
To the developers/maintainers of the stageR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/stageR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1851/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| stageR 1.14.0 (landing page) Koen Van den Berge
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: stageR |
| Version: 1.14.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/stageR_1.14.0.tar.gz && rm -rf stageR.buildbin-libdir && mkdir stageR.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=stageR.buildbin-libdir stageR_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL stageR_1.14.0.zip && rm stageR_1.14.0.tar.gz stageR_1.14.0.zip |
| StartedAt: 2021-10-14 08:48:23 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 08:49:03 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 40.6 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/stageR_1.14.0.tar.gz && rm -rf stageR.buildbin-libdir && mkdir stageR.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=stageR.buildbin-libdir stageR_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL stageR_1.14.0.zip && rm stageR_1.14.0.tar.gz stageR_1.14.0.zip
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install for i386
* installing *source* package 'stageR' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'stageR'
finding HTML links ... done
adjustedAlphaLevel html
esetProstate html
getAdjustedPValues html
finding level-2 HTML links ... done
Rd warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/Rtmp2nWk6n/R.INSTALL144c11454ce3/stageR/man/getAdjustedPValues.Rd:34: missing link 'stageWiseAdjustment,stageR,character,numeric-method'
getAlpha html
getMethod html
getPConfirmation html
getPScreen html
getResults html
getSignificantGenes html
getSignificantTx html
getTx2gene html
hammer.eset html
isAdjusted html
isPScreenAdjusted html
stageR html
stageRClass html
Rd warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/Rtmp2nWk6n/R.INSTALL144c11454ce3/stageR/man/stageRClass.Rd:19: missing link 'getAdjustedPValues,stageR,logical,logical-method'
Rd warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/Rtmp2nWk6n/R.INSTALL144c11454ce3/stageR/man/stageRClass.Rd:19: missing link 'getResults,stageR-method'
stageRTx html
stageWiseAdjustment html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'stageR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'stageR' as stageR_1.14.0.zip
* DONE (stageR)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'stageR' successfully unpacked and MD5 sums checked