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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:scHOT.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings scHOT_1.4.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/scHOT.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'scHOT/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'scHOT' version '1.4.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'scHOT' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                              user system elapsed
scHOT_estimatePvalues        90.05   0.03   90.10
scHOT                        83.96   0.34   84.30
scHOT_performPermutationTest 83.79   0.03   83.83
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                              user system elapsed
scHOT_performPermutationTest 89.62   0.01   89.64
scHOT                        88.36   0.08   88.50
scHOT_estimatePvalues        88.18   0.03   88.22
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/scHOT_1.4.0.tar.gz && rm -rf scHOT.buildbin-libdir && mkdir scHOT.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=scHOT.buildbin-libdir scHOT_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL scHOT_1.4.0.zip && rm scHOT_1.4.0.tar.gz scHOT_1.4.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 42 5759k   42 2475k    0     0  2777k      0  0:00:02 --:--:--  0:00:02 2778k
 49 5759k   49 2851k    0     0  1502k      0  0:00:03  0:00:01  0:00:02 1503k
 58 5759k   58 3373k    0     0  1167k      0  0:00:04  0:00:02  0:00:02 1167k
100 5759k  100 5759k    0     0  1495k      0  0:00:03  0:00:03 --:--:-- 1495k

install for i386

* installing *source* package 'scHOT' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'scHOT'
    finding HTML links ... done
    MOB_subset                              html  
    liver                                   html  
    params-set                              html  
    plotColouredExpression                  html  
    plotEgoNetwork                          html  
    plotHigherOrderSequence                 html  
    plotOrderedExpression                   html  
    positionColData-set                     html  
    positionType-set                        html  
    scHOT-class                             html  
    scHOT                                   html  
    scHOT_addTestingScaffold                html  
    scHOT_buildFromMatrix                   html  
    scHOT_buildFromSCE                      html  
    scHOT_calculateGlobalHigherOrderFunction
                                            html  
    scHOT_calculateHigherOrderTestStatistics
                                            html  
    scHOT_estimatePvalues                   html  
    scHOT_output-set                        html  
    scHOT_performPermutationTest            html  
    scHOT_plotPermutationDistributions      html  
    scHOT_setPermutationScaffold            html  
    scHOT_setWeightMatrix                   html  
    scHOT_stripOutput                       html  
    spatialWeightMatrix                     html  
    testingScaffold-set                     html  
    thin                                    html  
    trajectoryWeightMatrix                  html  
    weightMatrix-set                        html  
    weightedPearson                         html  
    weightedSpearman                        html  
    weightedVariance                        html  
    weightedZIKendall                       html  
    weightedZISpearman                      html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'scHOT' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'scHOT' as scHOT_1.4.0.zip
* DONE (scHOT)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'scHOT' successfully unpacked and MD5 sums checked