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This page was generated on 2021-10-15 15:06:15 -0400 (Fri, 15 Oct 2021).

BUILD BIN results for pathwayPCA on tokay2

To the developers/maintainers of the pathwayPCA package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/pathwayPCA.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
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raw results

Package 1354/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
pathwayPCA 1.8.0  (landing page)
Gabriel Odom
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/pathwayPCA
git_branch: RELEASE_3_13
git_last_commit: 4ab8ed1
git_last_commit_date: 2021-05-19 12:42:02 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: pathwayPCA
Version: 1.8.0
Command: rm -rf pathwayPCA.buildbin-libdir && mkdir pathwayPCA.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=pathwayPCA.buildbin-libdir pathwayPCA_1.8.0.tar.gz
StartedAt: 2021-10-15 10:53:50 -0400 (Fri, 15 Oct 2021)
EndedAt: 2021-10-15 10:55:03 -0400 (Fri, 15 Oct 2021)
EllapsedTime: 73.1 seconds
RetCode: 0
Status:   OK  
PackageFile: pathwayPCA_1.8.0.zip
PackageFileSize: 2.956 MiB

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf pathwayPCA.buildbin-libdir && mkdir pathwayPCA.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=pathwayPCA.buildbin-libdir pathwayPCA_1.8.0.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'pathwayPCA' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'pathwayPCA'
    finding HTML links ... done
    AESPCA_pVals                            html  
    CheckAssay                              html  
    CheckPwyColl                            html  
    CheckSampleIDs                          html  
    Contains                                html  
    ControlFDR                              html  
    CreateOmics                             html  
    CreateOmicsPathway                      html  
    CreatePathwayCollection                 html  
    ExtractAESPCs                           html  
    GumbelMixpValues                        html  
    IntersectOmicsPwyCollct                 html  
    JoinPhenoAssay                          html  
    LoadOntoPCs                             html  
    OmicsCateg-class                        html  
    OmicsPathway-class                      html  
    OmicsReg-class                          html  
    OmicsSurv-class                         html  
    OptimGumbelMixParams                    html  
    PathwaytValues                          html  
    PermTestCateg                           html  
    PermTestReg                             html  
    PermTestSurv                            html  
    SE2Tidy                                 html  
    SubsetPathwayCollection                 html  
    SubsetPathwayData                       html  
    SuperPCA_pVals                          html  
    TabulatepValues                         html  
    TransposeAssay                          html  
    ValidOmicsSurv                          html  
    WhichPathways                           html  
    aespca                                  html  
    colonSurv_df                            html  
    colon_pathwayCollection                 html  
    coxTrain_fun                            html  
    getPathPCLs                             html  
    getPathpVals                            html  
    get_set_OmicsPathway                    html  
    get_set_OmicsRegCateg                   html  
    get_set_OmicsSurv                       html  
    glmTrain_fun                            html  
    lars.lsa                                html  
    mysvd                                   html  
    normalize                               html  
    olsTrain_fun                            html  
    pathwayPCA-package                      html  
    pathway_tControl                        html  
    pathway_tScores                         html  
    permuteSamps                            html  
    print.pathwayCollection                 html  
    read_gmt                                html  
    show-OmicsPathway-method                html  
    superpc.st                              html  
    superpc.train                           html  
    wikipwsHS_Entrez_pathwayCollection      html  
    wikipwsHS_Symbol_pathwayCollection      html  
    write_gmt                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'pathwayPCA' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'pathwayPCA' as pathwayPCA_1.8.0.zip
* DONE (pathwayPCA)