##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/microRNA_1.50.0.tar.gz && rm -rf microRNA.buildbin-libdir && mkdir microRNA.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=microRNA.buildbin-libdir microRNA_1.50.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL microRNA_1.50.0.zip && rm microRNA_1.50.0.tar.gz microRNA_1.50.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  7 5885k    7  461k    0     0  1233k      0  0:00:04 --:--:--  0:00:04 1233k
 25 5885k   25 1485k    0     0  1090k      0  0:00:05  0:00:01  0:00:04 1090k
 42 5885k   42 2496k    0     0  1058k      0  0:00:05  0:00:02  0:00:03 1058k
 79 5885k   79 4651k    0     0  1384k      0  0:00:04  0:00:03  0:00:01 1385k
100 5885k  100 5885k    0     0  1561k      0  0:00:03  0:00:03 --:--:-- 1561k

install for i386

* installing *source* package 'microRNA' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"c:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c longest_common_substring.cpp -o longest_common_substring.o
longest_common_substring.cpp: In function 'SEXPREC* longest_common_substring(SEXP)':
longest_common_substring.cpp:55:15: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and '__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type' {aka 'int'} [-Wsign-compare]
         if (i == len[index] - 1) { // ignore null termination character
             ~~^~~~~~~~~~~~~~~~~
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o microRNA.dll tmp.def longest_common_substring.o -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/microRNA.buildbin-libdir/00LOCK-microRNA/00new/microRNA/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'microRNA'
    finding HTML links ... done
    RNA2DNA                                 html  
    get_selfhyb_subseq                      html  
    hsSeqs                                  html  
    hsTargets                               html  
    matchSeeds                              html  
    mmSeqs                                  html  
    mmTargets                               html  
    s3utr                                   html  
    seedRegions                             html  
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'microRNA' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c longest_common_substring.cpp -o longest_common_substring.o
longest_common_substring.cpp: In function 'SEXPREC* longest_common_substring(SEXP)':
longest_common_substring.cpp:55:15: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and '__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type' {aka 'int'} [-Wsign-compare]
         if (i == len[index] - 1) { // ignore null termination character
             ~~^~~~~~~~~~~~~~~~~
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o microRNA.dll tmp.def longest_common_substring.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/microRNA.buildbin-libdir/microRNA/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'microRNA' as microRNA_1.50.0.zip
* DONE (microRNA)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'microRNA' successfully unpacked and MD5 sums checked