| Back to Multiple platform build/check report for BioC 3.13 | 
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This page was generated on 2021-10-15 15:05:43 -0400 (Fri, 15 Oct 2021).
| To the developers/maintainers of the imageHTS package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/imageHTS.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. | 
| Package 910/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| imageHTS 1.42.0  (landing page) Joseph Barry 
 | nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK |  | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK |  | ||||||||
| Package: imageHTS | 
| Version: 1.42.0 | 
| Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data imageHTS | 
| StartedAt: 2021-10-14 07:30:57 -0400 (Thu, 14 Oct 2021) | 
| EndedAt: 2021-10-14 07:33:34 -0400 (Thu, 14 Oct 2021) | 
| EllapsedTime: 157.1 seconds | 
| RetCode: 1 | 
| Status: ERROR | 
| PackageFile: None | 
| PackageFileSize: NA | 
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### Running command:
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###   /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data imageHTS
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* checking for file ‘imageHTS/DESCRIPTION’ ... OK
* preparing ‘imageHTS’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘imageHTS-introduction.Rnw’ using Sweave
Loading required package: EBImage
Attaching package: ‘EBImage’
The following object is masked _by_ ‘.GlobalEnv’:
    display
Loading required package: cellHTS2
Loading required package: RColorBrewer
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:parallel’:
    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from ‘package:stats’:
    IQR, mad, sd, var, xtabs
The following objects are masked from ‘package:base’:
    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max, which.min
Welcome to Bioconductor
    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.
Attaching package: ‘Biobase’
The following object is masked from ‘package:EBImage’:
    channel
Loading required package: genefilter
Loading required package: splots
Loading required package: vsn
Loading required package: hwriter
Loading required package: locfit
locfit 1.5-9.4 	 2020-03-24
Loading required package: grid
trying URL 'http://www.huber.embl.de/cellmorph/kimorph//conf/imageconf.txt'
Content type 'text/plain; charset=UTF-8' length 374 bytes
==================================================
downloaded 374 bytes
trying URL 'http://www.huber.embl.de/cellmorph/kimorph//conf/description.txt'
Warning in fileHTS(object, type = "file", filename = descripFile, access = access) :
  cannot download the file pointed by "http://www.huber.embl.de/cellmorph/kimorph//conf/description.txt" to the location "/tmp/Rtmp9M5PjR/kimorph/conf/description.txt"
trying URL 'http://www.huber.embl.de/cellmorph/kimorph//conf/plateconf.txt'
Content type 'text/plain; charset=UTF-8' length 415 bytes
==================================================
downloaded 415 bytes
trying URL 'http://www.huber.embl.de/cellmorph/kimorph//conf/screenlog.txt'
Content type 'text/plain; charset=UTF-8' length 110 bytes
==================================================
downloaded 110 bytes
Error: processing vignette 'imageHTS-introduction.Rnw' failed with diagnostics:
 chunk 28 (label = init) 
Error in (function (filename, path, ...)  : 
  The file 'description.txt' could not be found in the given path '/tmp/Rtmp9M5PjR/kimorph/conf'.
--- failed re-building ‘imageHTS-introduction.Rnw’
SUMMARY: processing the following file failed:
  ‘imageHTS-introduction.Rnw’
Error: Vignette re-building failed.
Execution halted