Lulu Chen
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/debCAM |
| git_branch: RELEASE_3_13 |
| git_last_commit: 86afedd |
| git_last_commit_date: 2021-05-19 12:46:14 -0400 (Wed, 19 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:02 -0400 (Fri, 15 Oct 2021).
|
To the developers/maintainers of the debCAM package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/debCAM.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 452/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| debCAM 1.10.0 (landing page) Lulu Chen
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | ERROR | skipped | skipped | |||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: debCAM |
| Version: 1.10.0 |
| Command: chmod a+r debCAM -R && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe --arch x64 CMD build --keep-empty-dirs --no-resave-data debCAM |
| StartedAt: 2021-10-14 13:16:15 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 13:22:41 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 385.7 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### chmod a+r debCAM -R && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe --arch x64 CMD build --keep-empty-dirs --no-resave-data debCAM
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* checking for file 'debCAM/DESCRIPTION' ... OK
* preparing 'debCAM':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'debcam.Rmd' using rmarkdown
Preprocessing
Registered S3 method overwritten by 'quantmod':
method from
as.zoo.data.frame zoo
outlier cluster number: 0
convex hull cluster number: 48
Marker Gene Selection
A and S Matrix Estimation
Attaching package: 'apcluster'
The following object is masked from 'package:stats':
heatmap
Preprocessing
outlier cluster number: 0
convex hull cluster number: 43
Marker Gene Selection
A and S Matrix Estimation
Setting options('download.file.method.GEOquery'='auto')
Setting options('GEOquery.inmemory.gpl'=FALSE)
Found 1 file(s)
GSE11058_series_matrix.txt.gz
trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/series/GSE11nnn/GSE11058/matrix/GSE11058_series_matrix.txt.gz'
Content type 'application/x-gzip' length 4590311 bytes (4.4 MB)
==================================================
downloaded 4.4 MB
Rows: 54675 Columns: 25
-- Column specification --------------------------------------------------------
Delimiter: "\t"
chr (1): ID_REF
dbl (24): GSM279589, GSM279590, GSM279591, GSM279592, GSM279593, GSM279594, ...
i Use `spec()` to retrieve the full column specification for this data.
i Specify the column types or set `show_col_types = FALSE` to quiet this message.
File stored at:
C:\Users\biocbuild\bbs-3.13-bioc\tmpdir\RtmpwRon3S/GPL570.soft
Quitting from lines 279-304 (debcam.Rmd)
Error: processing vignette 'debcam.Rmd' failed with diagnostics:
invalid 'row.names' length
--- failed re-building 'debcam.Rmd'
SUMMARY: processing the following file failed:
'debcam.Rmd'
Error: Vignette re-building failed.
Execution halted