| Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:05:53 -0400 (Fri, 15 Oct 2021).
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To the developers/maintainers of the SingleCellSignalR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SingleCellSignalR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1777/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SingleCellSignalR 1.4.0 (landing page) Jacques Colinge
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | WARNINGS | |||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |||||||||
| Package: SingleCellSignalR |
| Version: 1.4.0 |
| Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:SingleCellSignalR.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings SingleCellSignalR_1.4.0.tar.gz |
| StartedAt: 2021-10-14 11:39:11 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 11:42:32 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 201.2 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: SingleCellSignalR.Rcheck |
| Warnings: 1 |
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### Running command:
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### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:SingleCellSignalR.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings SingleCellSignalR_1.4.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.13-bioc/meat/SingleCellSignalR.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SingleCellSignalR/DESCRIPTION’ ... OK
* this is package ‘SingleCellSignalR’ version ‘1.4.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SingleCellSignalR’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 5.7Mb
sub-directories of 1Mb or more:
data 5.5Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... WARNING
LazyData DB of 5.9 MB without LazyDataCompression set
See §1.1.6 of 'Writing R Extensions'
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
intra_network 10.463 0.304 10.767
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 1 NOTE
See
‘/home/biocbuild/bbs-3.13-bioc/meat/SingleCellSignalR.Rcheck/00check.log’
for details.
SingleCellSignalR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL SingleCellSignalR ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’ * installing *source* package ‘SingleCellSignalR’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SingleCellSignalR)
SingleCellSignalR.Rcheck/SingleCellSignalR-Ex.timings
| name | user | system | elapsed | |
| LRscore | 0.001 | 0.000 | 0.001 | |
| cell_classifier | 0.054 | 0.012 | 0.065 | |
| cell_signaling | 0.044 | 0.012 | 0.056 | |
| cluster_analysis | 0.002 | 0.000 | 0.002 | |
| clustering | 0.574 | 0.008 | 0.582 | |
| data_prepare | 0.026 | 0.000 | 0.026 | |
| expression_plot | 0.008 | 0.000 | 0.007 | |
| expression_plot_2 | 0.007 | 0.000 | 0.006 | |
| inter_network | 0.003 | 0.000 | 0.002 | |
| intra_network | 10.463 | 0.304 | 10.767 | |
| markers | 0.003 | 0.008 | 0.011 | |
| mv_interactions | 0.001 | 0.000 | 0.001 | |
| simplify_interactions | 0.001 | 0.000 | 0.001 | |
| visualize_interactions | 0.203 | 0.000 | 0.203 | |