Rujin Wang
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/SCOPE |
| git_branch: RELEASE_3_13 |
| git_last_commit: 16e6b55 |
| git_last_commit_date: 2021-05-19 12:49:33 -0400 (Wed, 19 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:21 -0400 (Fri, 15 Oct 2021).
|
To the developers/maintainers of the SCOPE package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SCOPE.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1708/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SCOPE 1.4.0 (landing page) Rujin Wang
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: SCOPE |
| Version: 1.4.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/SCOPE_1.4.0.tar.gz && rm -rf SCOPE.buildbin-libdir && mkdir SCOPE.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SCOPE.buildbin-libdir SCOPE_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL SCOPE_1.4.0.zip && rm SCOPE_1.4.0.tar.gz SCOPE_1.4.0.zip |
| StartedAt: 2021-10-14 10:33:43 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 10:34:38 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 55.1 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/SCOPE_1.4.0.tar.gz && rm -rf SCOPE.buildbin-libdir && mkdir SCOPE.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SCOPE.buildbin-libdir SCOPE_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL SCOPE_1.4.0.zip && rm SCOPE_1.4.0.tar.gz SCOPE_1.4.0.zip
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install for i386
* installing *source* package 'SCOPE' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'DescTools::%:%' by 'foreach::%:%' when loading 'SCOPE'
** help
*** installing help indices
converting help for package 'SCOPE'
finding HTML links ... done
QCmetric.scopeDemo html
Y_sim html
coverageObj.scopeDemo html
get_bam_bed html
get_coverage_scDNA html
get_gc html
get_gini html
get_mapp html
get_samp_QC html
iCN_sim html
initialize_ploidy html
initialize_ploidy_group html
normObj.scopeDemo html
normalize_codex2_ns_noK html
normalize_scope html
normalize_scope_foreach html
normalize_scope_group html
perform_qc html
plot_EM_fit html
plot_iCN html
ref.scopeDemo html
ref_sim html
segment_CBScs html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'DescTools::%:%' by 'foreach::%:%' when loading 'SCOPE'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'DescTools::%:%' by 'foreach::%:%' when loading 'SCOPE'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'SCOPE' ...
** testing if installed package can be loaded
Warning: replacing previous import 'DescTools::%:%' by 'foreach::%:%' when loading 'SCOPE'
* MD5 sums
packaged installation of 'SCOPE' as SCOPE_1.4.0.zip
* DONE (SCOPE)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'SCOPE' successfully unpacked and MD5 sums checked