Vladimir Kiselev
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/SC3 |
| git_branch: RELEASE_3_13 |
| git_last_commit: 2fc947c |
| git_last_commit_date: 2021-05-19 12:17:27 -0400 (Wed, 19 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:21 -0400 (Fri, 15 Oct 2021).
|
To the developers/maintainers of the SC3 package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SC3.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1676/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SC3 1.20.0 (landing page) Vladimir Kiselev
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: SC3 |
| Version: 1.20.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/SC3_1.20.0.tar.gz && rm -rf SC3.buildbin-libdir && mkdir SC3.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SC3.buildbin-libdir SC3_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL SC3_1.20.0.zip && rm SC3_1.20.0.tar.gz SC3_1.20.0.zip |
| StartedAt: 2021-10-14 08:56:29 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 08:58:14 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 105.0 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/SC3_1.20.0.tar.gz && rm -rf SC3.buildbin-libdir && mkdir SC3.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SC3.buildbin-libdir SC3_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL SC3_1.20.0.zip && rm SC3_1.20.0.tar.gz SC3_1.20.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
72 1742k 72 1255k 0 0 1399k 0 0:00:01 --:--:-- 0:00:01 1399k
100 1742k 100 1742k 0 0 1551k 0 0:00:01 0:00:01 --:--:-- 1552k
install for i386
* installing *source* package 'SC3' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppArmadillo/include' -I"c:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppArmadillo/include' -I"c:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cppFunctions.cpp -o cppFunctions.o
cppFunctions.cpp: In function 'arma::mat consmx(arma::mat)':
cppFunctions.cpp:63:16: warning: comparison of integer expressions of different signedness: 'int' and 'const uword' {aka 'const unsigned int'} [-Wsign-compare]
for (j = 0; j < dat.n_cols; j++) {
~~^~~~~~~~~~~~
cppFunctions.cpp:64:17: warning: comparison of integer expressions of different signedness: 'int' and 'const uword' {aka 'const unsigned int'} [-Wsign-compare]
for (i = 0; i < dat.n_rows; i++) {
~~^~~~~~~~~~~~
cppFunctions.cpp:65:22: warning: comparison of integer expressions of different signedness: 'int' and 'const uword' {aka 'const unsigned int'} [-Wsign-compare]
for (k = i + 1; k < dat.n_rows; k++) {
~~^~~~~~~~~~~~
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o SC3.dll tmp.def RcppExports.o cppFunctions.o -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/SC3.buildbin-libdir/00LOCK-SC3/00new/SC3/libs/i386
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'SC3'
finding HTML links ... done
ED1 html
ED2 html
ann html
calculate_distance html
calculate_stability html
consensus_matrix html
consmx html
estkTW html
get_auroc html
get_biolgy html
get_de_genes html
get_marker_genes html
get_outl_cells html
get_processed_dataset html
markers_for_heatmap html
norm_laplacian html
organise_de_genes html
organise_marker_genes html
prepare_for_svm html
reindex_clusters html
sc3 html
sc3_calc_biology html
sc3_calc_consens html
sc3_calc_dists html
sc3_calc_transfs html
sc3_estimate_k html
sc3_export_results_xls html
sc3_interactive html
sc3_kmeans html
sc3_plot_cluster_stability html
sc3_plot_consensus html
sc3_plot_de_genes html
sc3_plot_expression html
sc3_plot_markers html
sc3_plot_silhouette html
sc3_prepare html
sc3_run_svm html
support_vector_machines html
tmult html
transformation html
yan html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'SC3' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cppFunctions.cpp -o cppFunctions.o
cppFunctions.cpp: In function 'arma::mat consmx(arma::mat)':
cppFunctions.cpp:63:16: warning: comparison of integer expressions of different signedness: 'int' and 'const uword' {aka 'const unsigned int'} [-Wsign-compare]
for (j = 0; j < dat.n_cols; j++) {
~~^~~~~~~~~~~~
cppFunctions.cpp:64:17: warning: comparison of integer expressions of different signedness: 'int' and 'const uword' {aka 'const unsigned int'} [-Wsign-compare]
for (i = 0; i < dat.n_rows; i++) {
~~^~~~~~~~~~~~
cppFunctions.cpp:65:22: warning: comparison of integer expressions of different signedness: 'int' and 'const uword' {aka 'const unsigned int'} [-Wsign-compare]
for (k = i + 1; k < dat.n_rows; k++) {
~~^~~~~~~~~~~~
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o SC3.dll tmp.def RcppExports.o cppFunctions.o -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/SC3.buildbin-libdir/SC3/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SC3' as SC3_1.20.0.zip
* DONE (SC3)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'SC3' successfully unpacked and MD5 sums checked