J. Toedling
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/Ringo |
| git_branch: RELEASE_3_13 |
| git_last_commit: 3da76e3 |
| git_last_commit_date: 2021-05-19 11:38:56 -0400 (Wed, 19 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:19 -0400 (Fri, 15 Oct 2021).
|
To the developers/maintainers of the Ringo package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Ringo.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1585/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| Ringo 1.56.0 (landing page) J. Toedling
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: Ringo |
| Version: 1.56.0 |
| Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:Ringo.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings Ringo_1.56.0.tar.gz |
| StartedAt: 2021-10-15 04:36:39 -0400 (Fri, 15 Oct 2021) |
| EndedAt: 2021-10-15 04:40:14 -0400 (Fri, 15 Oct 2021) |
| EllapsedTime: 215.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: Ringo.Rcheck |
| Warnings: 0 |
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### Running command:
###
### C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:Ringo.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings Ringo_1.56.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/Ringo.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Ringo/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'Ringo' version '1.56.0'
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Depends: includes the non-default packages:
'Biobase', 'RColorBrewer', 'limma', 'Matrix', 'grid', 'lattice'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'Ringo' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
'limma'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' call to 'grid' which was already attached by Depends.
Please remove these calls from your code.
'library' or 'require' calls in package code:
'mclust' 'rtracklayer' 'topGO'
Please use :: or requireNamespace() instead.
See section 'Suggested packages' in the 'Writing R Extensions' manual.
Namespace in Imports field not imported from: 'limma'
All declared Imports should be used.
Packages in Depends field not imported from:
'Biobase' 'Matrix' 'RColorBrewer' 'grid' 'lattice' 'limma'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
There are ::: calls to the package's namespace in its code. A package
almost never needs to use ::: for its own objects:
'clusters'
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.onAttach: no visible global function definition for 'addVigs2WinMenu'
asExprSet: no visible global function definition for 'featureNames<-'
asExprSet: no visible global function definition for 'featureData<-'
autocor: no visible global function definition for 'featureNames'
autocor: no visible global function definition for 'exprs'
autocor : <anonymous>: no visible global function definition for
'matchpt'
autocor: no visible global function definition for 'cor'
chersToBED: no visible global function definition for 'write.table'
chipAlongChrom: no visible global function definition for
'featureNames'
chipAlongChrom: no visible global function definition for 'exprs'
chipAlongChrom: no visible global function definition for 'brewer.pal'
chipAlongChrom: no visible global function definition for
'pushViewport'
chipAlongChrom: no visible global function definition for 'viewport'
chipAlongChrom: no visible global function definition for 'grid.layout'
chipAlongChrom: no visible global function definition for
'dataViewport'
chipAlongChrom: no visible global function definition for 'grid.yaxis'
chipAlongChrom: no visible global function definition for 'gpar'
chipAlongChrom: no visible global function definition for 'grid.text'
chipAlongChrom: no visible global function definition for 'unit'
chipAlongChrom: no visible global function definition for 'draw.key'
chipAlongChrom: no visible global function definition for 'sampleNames'
chipAlongChrom: no visible global function definition for 'strwidth'
chipAlongChrom: no visible global function definition for 'strheight'
chipAlongChrom: no visible global function definition for 'popViewport'
chipAlongChrom: no visible global function definition for 'grid.lines'
chipAlongChrom: no visible global function definition for
'grid.segments'
chipAlongChrom: no visible global function definition for 'arrow'
chipAlongChrom1: no visible global function definition for
'featureNames'
chipAlongChrom1: no visible global function definition for 'exprs'
chipAlongChrom1: no visible global function definition for 'colors'
chipAlongChrom1: no visible global function definition for 'brewer.pal'
chipAlongChrom1: no visible global function definition for 'axis'
chipAlongChrom1: no visible global function definition for 'mtext'
chipAlongChrom1: no visible global function definition for 'abline'
chipAlongChrom1: no visible global function definition for 'lines'
chipAlongChrom1: no visible global function definition for 'points'
chipAlongChrom1: no visible global function definition for 'rug'
chipAlongChrom1: no visible global function definition for
'sampleNames'
chipAlongChrom1: no visible global function definition for 'legend'
compute.gc: no visible global function definition for 'listLen'
computeRunningMedians: no visible global function definition for
'varLabels'
computeRunningMedians: no visible global function definition for
'pData'
computeRunningMedians: no visible global function definition for
'sampleNames'
computeRunningMedians: no visible global function definition for
'exprs'
computeRunningMedians: no visible global function definition for
'featureNames'
computeRunningMedians: no visible global function definition for
'phenoData'
computeRunningMedians: no visible global function definition for
'featureNames<-'
computeRunningMedians: no visible global function definition for
'featureData<-'
computeRunningMedians: no visible global function definition for
'featureData'
computeRunningMedians: no visible global function definition for
'sampleNames<-'
computeSlidingT: no visible global function definition for 'exprs'
computeSlidingT: no visible global function definition for
'featureNames'
computeSlidingT: no visible global function definition for
'sampleNames'
computeSlidingT: no visible binding for global variable 'median'
computeSlidingT: no visible global function definition for 'median'
computeSlidingT: no visible global function definition for
'featureNames<-'
computeSlidingT: no visible global function definition for
'featureData<-'
computeSlidingT: no visible global function definition for
'featureData'
computeSlidingT: no visible global function definition for
'sampleNames<-'
corPlot: no visible global function definition for 'exprs'
corPlot: no visible global function definition for 'relevel'
corPlot: no visible global function definition for 'pairs'
corPlot : <anonymous>: no visible global function definition for 'par'
corPlot : <anonymous>: no visible global function definition for
'abline'
exportCCData: no visible global function definition for 'exprs'
exportCCData: no visible global function definition for 'exprs<-'
exportCCData: no visible global function definition for
'package.version'
exportCCData: no visible global function definition for 'write.table'
exportCherList: no visible global function definition for 'IRanges'
exportCherList: no visible global function definition for 'GenomicData'
exportCherList: no visible global function definition for 'export'
findChersOnSmoothed: no visible global function definition for 'pData'
findChersOnSmoothed: no visible global function definition for
'sampleNames'
findChersOnSmoothed: no visible global function definition for
'featureNames'
findChersOnSmoothed : <anonymous>: no visible global function
definition for 'exprs'
ftr2xys: no visible global function definition for 'read.delim'
ftr2xys: no visible global function definition for 'write.table'
image.RGList: no visible global function definition for
'colorRampPalette'
image.RGList: no visible global function definition for 'brewer.pal'
image.RGList: no visible global function definition for 'quantile'
image.RGList: no visible global function definition for 'points'
merge.RGList: no visible global function definition for 'makeUnique'
newVP: no visible global function definition for 'pushViewport'
newVP: no visible global function definition for 'viewport'
newVP: no visible global function definition for 'grid.layout'
newVP: no visible global function definition for 'grid.text'
newVP: no visible global function definition for 'gpar'
newVP: no visible global function definition for 'popViewport'
nimblegenScale : tukey.biweight: no visible global function definition
for 'median'
normalizeBetweenArraysVSN: no visible global function definition for
'exprs'
oneChannelVSN: no visible global function definition for 'predict'
pair2xys: no visible global function definition for 'read.delim'
pair2xys: no visible global function definition for 'write.table'
panel.cor: no visible global function definition for 'par'
panel.cor: no visible global function definition for 'cor'
panel.cor: no visible global function definition for 'strwidth'
panel.cor: no visible global function definition for 'text'
panel.scatter: no visible global function definition for 'points'
panel.scatter: no visible global function definition for 'abline'
plot.cher: no visible global function definition for 'sampleNames'
plot.cher: no visible global function definition for 'rug'
plot.cher: no visible global function definition for 'legend'
plotAlongChromLegend : formatRow: no visible global function definition
for 'convertWidth'
plotAlongChromLegend : formatRow: no visible global function definition
for 'stringWidth'
plotAlongChromLegend : formatRow: no visible global function definition
for 'grid.rect'
plotAlongChromLegend : formatRow: no visible global function definition
for 'unit'
plotAlongChromLegend : formatRow: no visible binding for global
variable 'gpar'
plotAlongChromLegend : formatRow: no visible global function definition
for 'grid.text'
plotAlongChromLegend : formatRow: no visible global function definition
for 'gpar'
plotAlongChromLegend: no visible global function definition for
'pushViewport'
plotAlongChromLegend: no visible global function definition for
'viewport'
plotAlongChromLegend: no visible global function definition for
'popViewport'
plotBM: no visible global function definition for 'arrows'
plotBM: no visible global function definition for 'axis'
plotFeatures: no visible global function definition for 'pushViewport'
plotFeatures: no visible global function definition for 'dataViewport'
plotFeatures: no visible global function definition for 'grid.segments'
plotFeatures: no visible global function definition for 'gpar'
plotFeatures: no visible global function definition for 'listLen'
plotFeatures: no visible global function definition for 'grid.rect'
plotFeatures: no visible global function definition for 'convertWidth'
plotFeatures: no visible global function definition for 'stringWidth'
plotFeatures: no visible global function definition for 'grid.text'
plotFeatures: no visible global function definition for 'popViewport'
plotOneChIPSample: no visible global function definition for 'unit'
plotOneChIPSample: no visible global function definition for 'quantile'
plotOneChIPSample: no visible global function definition for
'pushViewport'
plotOneChIPSample: no visible global function definition for
'dataViewport'
plotOneChIPSample: no visible global function definition for
'grid.yaxis'
plotOneChIPSample: no visible global function definition for 'gpar'
plotOneChIPSample: no visible global function definition for
'grid.text'
plotOneChIPSample: no visible global function definition for
'grid.lines'
plotOneChIPSample: no visible global function definition for
'grid.polyline'
plotOneChIPSample: no visible global function definition for
'grid.points'
plotOneChIPSample: no visible global function definition for
'popViewport'
posToProbeAnno: no visible global function definition for 'read.delim'
preprocess: no visible global function definition for
'normalizeWithinArrays'
preprocess: no visible global function definition for
'normalizeBetweenArrays'
quantilesOverPositions: no visible global function definition for
'exprs'
quantilesOverPositions : <anonymous>: no visible global function
definition for 'approx'
quantilesOverPositions: no visible global function definition for
'sampleNames'
quantilesOverPositions : <anonymous>: no visible binding for global
variable 'quantile'
quantilesOverPositions: no visible global function definition for
'density'
quantilesOverPositions: no visible global function definition for
'approx'
readNgIntensitiesTxt: no visible global function definition for
'read.table'
readNgIntensitiesTxt: no visible global function definition for
'removeExt'
readNimblegen: no visible global function definition for 'readTargets'
readNimblegen: no visible global function definition for
'readSpotTypes'
readNimblegen: no visible global function definition for
'controlStatus'
sigGOTable: no visible global function definition for 'mappedkeys'
sigGOTable: no visible binding for global variable 'annFUN.gene2GO'
sigGOTable: no visible binding for global variable 'annFUN.org'
sigGOTable: no visible global function definition for 'runTest'
sigGOTable: no visible global function definition for 'GenTable'
sigGOTable: no visible global function definition for 'usedGO'
sigGOTable: no visible binding for global variable 'p.value'
splitAndSimplify: no visible global function definition for 'listLen'
takeMeanOverGroups: no visible global function definition for 'pData'
takeMeanOverGroups: no visible global function definition for 'exprs'
takeMeanOverGroups: no visible global function definition for
'featureNames<-'
takeMeanOverGroups: no visible global function definition for
'featureNames'
twoGaussiansNull: no visible binding for global variable
'p.adjust.methods'
twoGaussiansNull: no visible global function definition for 'Mclust'
twoGaussiansNull: no visible global function definition for 'na.omit'
twoGaussiansNull: no visible global function definition for 'pnorm'
upperBoundNull: no visible global function definition for 'na.omit'
upperBoundNull: no visible global function definition for 'quantile'
cbind2,ExpressionSet-ExpressionSet: no visible global function
definition for 'featureNames'
cbind2,ExpressionSet-ExpressionSet: no visible global function
definition for 'exprs'
cbind2,ExpressionSet-ExpressionSet: no visible global function
definition for 'sampleNames'
plot,cher-ExpressionSet: no visible global function definition for
'sampleNames'
plot,qop-ANY: no visible global function definition for 'axis'
plot,qop-ANY: no visible global function definition for 'rainbow'
plot,qop-ANY: no visible global function definition for 'lines'
plot,qop-ANY: no visible global function definition for 'legend'
Undefined global functions or variables:
GenTable GenomicData IRanges Mclust abline addVigs2WinMenu
annFUN.gene2GO annFUN.org approx arrow arrows axis brewer.pal
colorRampPalette colors controlStatus convertWidth cor dataViewport
density draw.key export exprs exprs<- featureData featureData<-
featureNames featureNames<- gpar grid.layout grid.lines grid.points
grid.polyline grid.rect grid.segments grid.text grid.yaxis legend
lines listLen makeUnique mappedkeys matchpt median mtext na.omit
normalizeBetweenArrays normalizeWithinArrays p.adjust.methods p.value
pData package.version pairs par phenoData pnorm points popViewport
predict pushViewport quantile rainbow read.delim read.table
readSpotTypes readTargets relevel removeExt rug runTest sampleNames
sampleNames<- strheight stringWidth strwidth text unit usedGO
varLabels viewport write.table
Consider adding
importFrom("grDevices", "colorRampPalette", "colors", "rainbow")
importFrom("graphics", "abline", "arrows", "axis", "legend", "lines",
"mtext", "pairs", "par", "points", "rug", "strheight",
"strwidth", "text")
importFrom("stats", "approx", "cor", "density", "median", "na.omit",
"p.adjust.methods", "pnorm", "predict", "quantile",
"relevel")
importFrom("utils", "read.delim", "read.table", "write.table")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for GNU extensions in Makefiles ... OK
* checking include directives in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files for i386 is not available
Note: information on .o files for x64 is not available
File 'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Ringo/libs/i386/Ringo.dll':
Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
Found 'printf', possibly from 'printf' (C)
File 'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Ringo/libs/x64/Ringo.dll':
Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
Found 'printf', possibly from 'printf' (C)
Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.
See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 5 NOTEs
See
'C:/Users/biocbuild/bbs-3.13-bioc/meat/Ringo.Rcheck/00check.log'
for details.
Ringo.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/Ringo_1.56.0.tar.gz && rm -rf Ringo.buildbin-libdir && mkdir Ringo.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Ringo.buildbin-libdir Ringo_1.56.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL Ringo_1.56.0.zip && rm Ringo_1.56.0.tar.gz Ringo_1.56.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
2 573k 2 14877 0 0 123k 0 0:00:04 --:--:-- 0:00:04 123k
100 573k 100 573k 0 0 1658k 0 --:--:-- --:--:-- --:--:-- 1657k
install for i386
* installing *source* package 'Ringo' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"c:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c mmeansd.cpp -o mmeansd.o
mmeansd.cpp: In function 'SEXPREC* moving_mean_sd(SEXP, SEXP, SEXP)':
mmeansd.cpp:29:24: warning: variable 'is' set but not used [-Wunused-but-set-variable]
int * x, nval, hs, is, i;
^~
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"c:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c mmedian.cpp -o mmedian.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"c:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c region_overlap.c -o region_overlap.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"c:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c ringo_init.c -o ringo_init.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o Ringo.dll tmp.def mmeansd.o mmedian.o region_overlap.o ringo_init.o -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/Ringo.buildbin-libdir/00LOCK-Ringo/00new/Ringo/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for 'ls' from package 'base' in package 'Ringo'
** help
*** installing help indices
converting help for package 'Ringo'
finding HTML links ... done
Ringo-internal html
arrayImage html
asExprSet html
autocorr html
cherByThreshold html
cherClass html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/Ringo.buildbin-libdir/00LOCK-Ringo/00new/Ringo/help/Cher.html
chipAlongChrom html
chipAlongChromOld html
computeRunningMedians html
compute_gc html
compute_sliding_t html
corrPlot html
exportCherList html
extractProbeAnno html
features2Probes html
findChersOnSmoothed html
ftr2xys html
getFeats html
newCER html
nimblegenNorm html
nonzero html
plotAutocorr html
plotBM html
plot_cher html
posToProbeAnnoEnvironment html
preprocess html
probeAnnoClass html
qopS4 html
quantilesOverPositions html
readNimblegen html
regionoverlap html
relateCERs html
sigGOTable html
sliding_meansd html
sliding_quantile html
twoGaussiansNull html
upperBoundNull html
validProbeAnno html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'Ringo' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c mmeansd.cpp -o mmeansd.o
mmeansd.cpp: In function 'SEXPREC* moving_mean_sd(SEXP, SEXP, SEXP)':
mmeansd.cpp:29:24: warning: variable 'is' set but not used [-Wunused-but-set-variable]
int * x, nval, hs, is, i;
^~
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c mmedian.cpp -o mmedian.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c region_overlap.c -o region_overlap.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c ringo_init.c -o ringo_init.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o Ringo.dll tmp.def mmeansd.o mmedian.o region_overlap.o ringo_init.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/Ringo.buildbin-libdir/Ringo/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Ringo' as Ringo_1.56.0.zip
* DONE (Ringo)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'Ringo' successfully unpacked and MD5 sums checked
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Ringo.Rcheck/examples_i386/Ringo-Ex.timings
|
Ringo.Rcheck/examples_x64/Ringo-Ex.timings
|