Min-Jeong Baek
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/RIPAT |
| git_branch: RELEASE_3_13 |
| git_last_commit: 1c308b1 |
| git_last_commit_date: 2021-05-19 12:54:50 -0400 (Wed, 19 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:19 -0400 (Fri, 15 Oct 2021).
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To the developers/maintainers of the RIPAT package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RIPAT.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1586/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| RIPAT 1.2.0 (landing page) Min-Jeong Baek
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: RIPAT |
| Version: 1.2.0 |
| Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:RIPAT.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings RIPAT_1.2.0.tar.gz |
| StartedAt: 2021-10-15 04:36:47 -0400 (Fri, 15 Oct 2021) |
| EndedAt: 2021-10-15 04:39:06 -0400 (Fri, 15 Oct 2021) |
| EllapsedTime: 138.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: RIPAT.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:RIPAT.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings RIPAT_1.2.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/RIPAT.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'RIPAT/DESCRIPTION' ... OK
* this is package 'RIPAT' version '1.2.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'RIPAT' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
annoByCpG: no visible global function definition for 'hist'
annoByCpG: no visible binding for global variable 'Range'
annoByCpG: no visible binding for global variable 'Freq'
annoByCpG: no visible binding for global variable 'Group'
annoByGene: no visible global function definition for 'hist'
annoByGene: no visible binding for global variable 'Range'
annoByGene: no visible binding for global variable 'Freq'
annoByGene: no visible binding for global variable 'Group'
annoByRepeat: no visible global function definition for 'hist'
annoByRepeat: no visible binding for global variable 'all_dist_dup_m'
annoByRepeat: no visible binding for global variable 'Range'
annoByRepeat: no visible binding for global variable 'Freq'
annoByRepeat: no visible binding for global variable 'Group'
annoByVar: no visible global function definition for 'hist'
annoByVar: no visible binding for global variable 'Range'
annoByVar: no visible binding for global variable 'Freq'
annoByVar: no visible binding for global variable 'Group'
makeDocument : <anonymous>: no visible global function definition for
'hist'
makeDocument: no visible binding for global variable 'group'
makeDocument: no visible binding for global variable 'type'
makeDocument: no visible binding for global variable 'convert_p'
makeDocument: no visible global function definition for 'par'
Undefined global functions or variables:
Freq Group Range all_dist_dup_m convert_p group hist par type
Consider adding
importFrom("graphics", "hist", "par")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
makeData 11.52 0.31 13.31
drawingKaryo 10.15 1.28 11.44
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
drawingKaryo 11.13 0.53 11.66
makeData 8.53 0.25 10.08
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'C:/Users/biocbuild/bbs-3.13-bioc/meat/RIPAT.Rcheck/00check.log'
for details.
RIPAT.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/RIPAT_1.2.0.tar.gz && rm -rf RIPAT.buildbin-libdir && mkdir RIPAT.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RIPAT.buildbin-libdir RIPAT_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL RIPAT_1.2.0.zip && rm RIPAT_1.2.0.tar.gz RIPAT_1.2.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
62 2811k 62 1766k 0 0 1688k 0 0:00:01 0:00:01 --:--:-- 1688k
100 2811k 100 2811k 0 0 1955k 0 0:00:01 0:00:01 --:--:-- 1955k
install for i386
* installing *source* package 'RIPAT' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'RIPAT'
finding HTML links ... done
annoByCpG html
annoByGene html
annoByRepeat html
annoByVar html
blast_gene html
blast_obj html
cpg_exam_db html
drawingKaryo html
gene_exam_db html
makeData html
makeDocument html
makeInputObj html
makeInputObj2 html
micro_exam_db html
repeat_exam_db html
tss_exam_db html
var_exam_db html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'RIPAT' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RIPAT' as RIPAT_1.2.0.zip
* DONE (RIPAT)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'RIPAT' successfully unpacked and MD5 sums checked
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RIPAT.Rcheck/examples_i386/RIPAT-Ex.timings
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RIPAT.Rcheck/examples_x64/RIPAT-Ex.timings
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