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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:QSutils.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings QSutils_1.10.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/QSutils.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'QSutils/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'QSutils' version '1.10.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'QSutils' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/QSutils_1.10.0.tar.gz && rm -rf QSutils.buildbin-libdir && mkdir QSutils.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=QSutils.buildbin-libdir QSutils_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL QSutils_1.10.0.zip && rm QSutils_1.10.0.tar.gz QSutils_1.10.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 76950  100 76950    0     0   488k      0 --:--:-- --:--:-- --:--:--  491k

install for i386

* installing *source* package 'QSutils' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'QSutils'
    finding HTML links ... done
    Collapse                                html  
    ConsSeq                                 html  
    CorrectGapsAndNs                        html  
    DBrule                                  html  
    DNA.dist                                html  
    DSFT                                    html  
    Diverge                                 html  
    DottedAlignment                         html  
    FAD                                     html  
    FreqMat                                 html  
    GenerateVars                            html  
    GenotypeStandards_A-H.fas               html  
    GetInfProfile                           html  
    GetQSData                               html  
    GetRandomSeq                            html  
    GiniSimpson                             html  
    HCq                                     html  
    Hill                                    html  
    IntersectStrandHpls                     html  
    MutationFreq                            html  
    MutsTbl                                 html  
    NucleotideDiversity                     html  
    PolyDist                                html  
    QSutils-package                         html  
    Rao                                     html  
    ReadAmplSeqs                            html  
    Renyi                                   html  
    ReportVariants                          html  
    SegSites                                html  
    Shannon                                 html  
    SortByMutations                         html  
    SummaryMuts                             html  
    TotalMutations                          html  
    Toy.GapsAndNs.fna                       html  
    ToyData_10_50_1000.fna                  html  
    ToyData_FWReads.fna                     html  
    ToyData_RVReads.fna                     html  
    UniqueMutations                         html  
    Unknown-Genotype.fna                    html  
    fn.ab                                   html  
    geom.series                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'QSutils' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'QSutils' as QSutils_1.10.0.zip
* DONE (QSutils)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'QSutils' successfully unpacked and MD5 sums checked