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This page was generated on 2021-10-15 15:06:17 -0400 (Fri, 15 Oct 2021).

BUILD BIN results for PureCN on tokay2

To the developers/maintainers of the PureCN package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/PureCN.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1461/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
PureCN 1.22.2  (landing page)
Markus Riester
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/PureCN
git_branch: RELEASE_3_13
git_last_commit: 1d595f4
git_last_commit_date: 2021-07-01 13:33:13 -0400 (Thu, 01 Jul 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: PureCN
Version: 1.22.2
Command: rm -rf PureCN.buildbin-libdir && mkdir PureCN.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PureCN.buildbin-libdir PureCN_1.22.2.tar.gz
StartedAt: 2021-10-15 11:08:19 -0400 (Fri, 15 Oct 2021)
EndedAt: 2021-10-15 11:09:44 -0400 (Fri, 15 Oct 2021)
EllapsedTime: 85.0 seconds
RetCode: 0
Status:   OK  
PackageFile: PureCN_1.22.2.zip
PackageFileSize: 5.999 MiB

Command output

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###
### Running command:
###
###   rm -rf PureCN.buildbin-libdir && mkdir PureCN.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PureCN.buildbin-libdir PureCN_1.22.2.tar.gz
###
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install for i386

* installing *source* package 'PureCN' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'PureCN'
    finding HTML links ... done
    PureCN-defunct                          html  
    PureCN-deprecated                       html  
    annotateTargets                         html  
    bootstrapResults                        html  
    calculateBamCoverageByInterval          html  
    calculateLogRatio                       html  
    calculateMappingBiasGatk4               html  
    calculateMappingBiasVcf                 html  
    calculatePowerDetectSomatic             html  
    calculateTangentNormal                  html  
    callAlterations                         html  
    callAlterationsFromSegmentation         html  
    callAmplificationsInLowPurity           html  
    callCIN                                 html  
    callLOH                                 html  
    callMutationBurden                      html  
    centromeres                             html  
    correctCoverageBias                     html  
    createCurationFile                      html  
    createNormalDatabase                    html  
    filterIntervals                         html  
    filterVcfBasic                          html  
    filterVcfMuTect                         html  
    filterVcfMuTect2                        html  
    findFocal                               html  
    getSexFromCoverage                      html  
    getSexFromVcf                           html  
    plotAbs                                 html  
    poolCoverage                            html  
    predictSomatic                          html  
    preprocessIntervals                     html  
    processMultipleSamples                  html  
    purecn.DNAcopy.bdry                     html  
    purecn.example.output                   html  
    readAllelicCountsFile                   html  
    readCoverageFile                        html  
    readCurationFile                        html  
    readLogRatioFile                        html  
    readSegmentationFile                    html  
    runAbsoluteCN                           html  
    segmentationCBS                         html  
    segmentationGATK4                       html  
    segmentationHclust                      html  
    segmentationPSCBS                       html  
    setMappingBiasVcf                       html  
    setPriorVcf                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'PureCN' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'PureCN' as PureCN_1.22.2.zip
* DONE (PureCN)