##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/NanoMethViz_1.2.0.tar.gz && rm -rf NanoMethViz.buildbin-libdir && mkdir NanoMethViz.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=NanoMethViz.buildbin-libdir NanoMethViz_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL NanoMethViz_1.2.0.zip && rm NanoMethViz_1.2.0.tar.gz NanoMethViz_1.2.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 61 1863k   61 1153k    0     0  1929k      0 --:--:-- --:--:-- --:--:-- 1929k
100 1863k  100 1863k    0     0  2268k      0 --:--:-- --:--:-- --:--:-- 2269k

install for i386

* installing *source* package 'NanoMethViz' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.13-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include'   -I"c:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.13-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include'   -I"c:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c convert_methy_to_dss.cpp -o convert_methy_to_dss.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.13-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include'   -I"c:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c utils.cpp -o utils.o
utils.cpp: In function 'std::__cxx11::string timestamp()':
utils.cpp:16:42: warning: unknown conversion type character 'F' in format [-Wformat=]
     strftime(time_str, sizeof(time_str), "%F %T", localtime(&t));
                                          ^~~~~~~
utils.cpp:16:42: warning: unknown conversion type character 'T' in format [-Wformat=]
C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o NanoMethViz.dll tmp.def RcppExports.o convert_methy_to_dss.o utils.o -LC:/Users/biocbuild/bbs-3.13-bioc/R/library/zlibbioc/libs/i386 -lzlib1bioc -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/NanoMethViz.buildbin-libdir/00LOCK-NanoMethViz/00new/NanoMethViz/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'NanoMethViz'
    finding HTML links ... done
    NanoMethResult-class                    html  
    NanoMethViz-package                     html  
    bsseq_to_edger                          html  
    bsseq_to_log_methy_ratio                html  
    convert_methy_format                    html  
    create_tabix_file                       html  
    exons                                   html  
    exons_to_genes                          html  
    get_example_exons_mus_musculus          html  
    get_exons_homo_sapiens                  html  
    get_exons_mus_musculus                  html  
    load_example_nanomethresult             html  
    methy                                   html  
    methy_col_names                         html  
    methy_to_bsseq                          html  
    plot_agg_regions                        html  
    plot_agg_regions_sample_grouped         html  
    plot_gene                               html  
    plot_gene_heatmap                       html  
    plot_grange                             html  
    plot_grange_heatmap                     html  
    plot_region                             html  
    plot_region_heatmap                     html  
    query_exons                             html  
    query_methy                             html  
    raw_methy_to_tabix                      html  
    samples                                 html  
    sort_methy_file                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'NanoMethViz' ...
** libs
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.13-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.13-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c convert_methy_to_dss.cpp -o convert_methy_to_dss.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.13-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c utils.cpp -o utils.o
utils.cpp: In function 'std::__cxx11::string timestamp()':
utils.cpp:16:42: warning: unknown conversion type character 'F' in format [-Wformat=]
     strftime(time_str, sizeof(time_str), "%F %T", localtime(&t));
                                          ^~~~~~~
utils.cpp:16:42: warning: unknown conversion type character 'T' in format [-Wformat=]
C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o NanoMethViz.dll tmp.def RcppExports.o convert_methy_to_dss.o utils.o -LC:/Users/biocbuild/bbs-3.13-bioc/R/library/zlibbioc/libs/x64 -lzlib1bioc -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/NanoMethViz.buildbin-libdir/NanoMethViz/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'NanoMethViz' as NanoMethViz_1.2.0.zip
* DONE (NanoMethViz)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'NanoMethViz' successfully unpacked and MD5 sums checked