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This page was generated on 2021-10-15 15:06:12 -0400 (Fri, 15 Oct 2021).

INSTALL results for MinimumDistance on tokay2

To the developers/maintainers of the MinimumDistance package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MinimumDistance.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1141/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MinimumDistance 1.36.0  (landing page)
Robert Scharpf
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/MinimumDistance
git_branch: RELEASE_3_13
git_last_commit: 9e0f7b9
git_last_commit_date: 2021-05-19 11:52:19 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: MinimumDistance
Version: 1.36.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/MinimumDistance_1.36.0.tar.gz && rm -rf MinimumDistance.buildbin-libdir && mkdir MinimumDistance.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MinimumDistance.buildbin-libdir MinimumDistance_1.36.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL MinimumDistance_1.36.0.zip && rm MinimumDistance_1.36.0.tar.gz MinimumDistance_1.36.0.zip
StartedAt: 2021-10-14 10:42:41 -0400 (Thu, 14 Oct 2021)
EndedAt: 2021-10-14 10:44:24 -0400 (Thu, 14 Oct 2021)
EllapsedTime: 103.1 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/MinimumDistance_1.36.0.tar.gz && rm -rf MinimumDistance.buildbin-libdir && mkdir MinimumDistance.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MinimumDistance.buildbin-libdir MinimumDistance_1.36.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL MinimumDistance_1.36.0.zip && rm MinimumDistance_1.36.0.tar.gz MinimumDistance_1.36.0.zip
###
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100  936k  100  936k    0     0  1908k      0 --:--:-- --:--:-- --:--:-- 1911k

install for i386

* installing *source* package 'MinimumDistance' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
No methods found in package 'oligoClasses' for request: 'mean' when loading 'crlmm'
Warning: replacing previous import 'ff::pattern' by 'grid::pattern' when loading 'MinimumDistance'
Creating a new generic function for 'allNames' in package 'MinimumDistance'
in method for 'coerce' with signature '"RangedDataCNV","GRanges"': no definition for class "RangedDataCNV"
in method for 'todf' with signature 'object="TrioSet",rangeData="RangedData"': no definition for class "RangedData"
in method for 'prune' with signature 'object="TrioSet",ranges="RangedDataCNV"': no definition for class "RangedDataCNV"
in method for 'prune' with signature 'object="TrioSetList",ranges="RangedDataCNV"': no definition for class "RangedDataCNV"
** help
*** installing help indices
  converting help for package 'MinimumDistance'
    finding HTML links ... done
    DNAcopyParam                            html  
    Defunct                                 html  
    Deprecated                              html  
    FilterParamMD-class                     html  
    FilterParamMD                           html  
    MAP                                     html  
    MAP2                                    html  
    MDRanges-class                          html  
    MinDistExperiment-class                 html  
    MinDistExperiment                       html  
    MinDistGRanges-class                    html  
    MinDistGRanges                          html  
    MinDistParam-class                      html  
    MinDistParam                            html  
    MinDistPosterior-class                  html  
    MinimumDistance                         html  
    ParentOffspring-class                   html  
    ParentOffspringList-class               html  
    Pedigree-class                          html  
    Pedigree                                html  
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/MinimumDistance.buildbin-libdir/00LOCK-MinimumDistance/00new/MinimumDistance/help/Pedigree.html
    PennParam                               html  
    TrioSet-class                           html  
    TrioSet                                 html  
    TrioSetList-class                       html  
    TrioSetList                             html  
    TrioSetListLD                           html  
    acf2                                    html  
    calculateMindist                        html  
    coercion-methods                        html  
    denovo                                  html  
    exampleTrioSetList                      html  
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/MinimumDistance.buildbin-libdir/00LOCK-MinimumDistance/00new/MinimumDistance/help/trioSetList.html
    filterExperiment                        html  
    mad2                                    html  
    mdLegend                                html  
    md_exp                                  html  
    md_gr                                   html  
    mindist                                 html  
    nMAD                                    html  
    pedigreeGrid                            html  
    pedigreeName                            html  
    pedigreeViewports                       html  
    plotDenovo                              html  
    range-ILimit-method                     html  
    segment2                                html  
    finding level-2 HTML links ... done

** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package 'oligoClasses' for request: 'mean' when loading 'crlmm'
Warning: replacing previous import 'ff::pattern' by 'grid::pattern' when loading 'MinimumDistance'
** testing if installed package can be loaded from final location
No methods found in package 'oligoClasses' for request: 'mean' when loading 'crlmm'
Warning: replacing previous import 'ff::pattern' by 'grid::pattern' when loading 'MinimumDistance'
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'MinimumDistance' ...
** testing if installed package can be loaded
No methods found in package 'oligoClasses' for request: 'mean' when loading 'crlmm'
Warning: replacing previous import 'ff::pattern' by 'grid::pattern' when loading 'MinimumDistance'
* MD5 sums
packaged installation of 'MinimumDistance' as MinimumDistance_1.36.0.zip
* DONE (MinimumDistance)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'MinimumDistance' successfully unpacked and MD5 sums checked