Britta Velten
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/MOFA2 |
| git_branch: RELEASE_3_13 |
| git_last_commit: 98a2d44 |
| git_last_commit_date: 2021-08-23 11:25:24 -0400 (Mon, 23 Aug 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:12 -0400 (Fri, 15 Oct 2021).
|
To the developers/maintainers of the MOFA2 package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MOFA2.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1173/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| MOFA2 1.2.2 (landing page) Britta Velten
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: MOFA2 |
| Version: 1.2.2 |
| Command: rm -rf MOFA2.buildbin-libdir && mkdir MOFA2.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe --arch x64 CMD INSTALL --no-multiarch --build --library=MOFA2.buildbin-libdir MOFA2_1.2.2.tar.gz |
| StartedAt: 2021-10-15 10:29:48 -0400 (Fri, 15 Oct 2021) |
| EndedAt: 2021-10-15 10:31:14 -0400 (Fri, 15 Oct 2021) |
| EllapsedTime: 85.8 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: MOFA2_1.2.2.zip |
| PackageFileSize: 3.764 MiB |
##############################################################################
##############################################################################
###
### Running command:
###
### rm -rf MOFA2.buildbin-libdir && mkdir MOFA2.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe --arch x64 CMD INSTALL --no-multiarch --build --library=MOFA2.buildbin-libdir MOFA2_1.2.2.tar.gz
###
##############################################################################
##############################################################################
* installing *source* package 'MOFA2' ...
** using non-staged installation via StagedInstall field
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for 'rownames' from package 'base' in package 'MOFA2'
Creating a generic function for 'colnames' from package 'base' in package 'MOFA2'
Creating a generic function for 'nrow' from package 'base' in package 'MOFA2'
Creating a generic function for 'ncol' from package 'base' in package 'MOFA2'
Creating a generic function for 'rownames<-' from package 'base' in package 'MOFA2'
Creating a generic function for 'colnames<-' from package 'base' in package 'MOFA2'
** help
*** installing help indices
converting help for package 'MOFA2'
finding HTML links ... done
MOFA html
add_mofa_factors_to_seurat html
calculate_contribution_scores html
calculate_variance_explained html
calculate_variance_explained_per_sample
html
cluster_samples html
compare_elbo html
finding level-2 HTML links ... done
compare_factors html
correlate_factors_with_covariates html
covariates_names html
create_mofa html
create_mofa_from_MultiAssayExperiment html
create_mofa_from_Seurat html
create_mofa_from_SingleCellExperiment html
create_mofa_from_df html
create_mofa_from_matrix html
factors_names html
features_metadata html
features_names html
get_covariates html
get_data html
get_default_data_options html
get_default_mefisto_options html
get_default_model_options html
get_default_stochastic_options html
get_default_training_options html
get_dimensions html
get_elbo html
get_expectations html
get_factors html
get_group_kernel html
get_imputed_data html
get_interpolated_factors html
get_lengthscales html
get_scales html
get_variance_explained html
get_weights html
groups_names html
impute html
interpolate_factors html
load_model html
make_example_data html
pipe html
plot_alignment html
plot_ascii_data html
plot_data_heatmap html
plot_data_overview html
plot_data_scatter html
plot_data_vs_cov html
plot_dimred html
plot_enrichment html
plot_enrichment_detailed html
plot_enrichment_heatmap html
plot_factor html
plot_factor_cor html
plot_factors html
plot_factors_vs_cov html
plot_group_kernel html
plot_interpolation_vs_covariate html
plot_sharedness html
plot_smoothness html
plot_top_weights html
plot_variance_explained html
plot_variance_explained_by_covariates html
plot_variance_explained_per_feature html
plot_weights html
plot_weights_heatmap html
plot_weights_scatter html
predict html
prepare_mofa html
run_enrichment html
run_mofa html
run_tsne html
run_umap html
samples_metadata html
samples_names html
select_model html
set_covariates html
subset_factors html
subset_features html
subset_groups html
subset_samples html
subset_views html
summarise_factors html
views_names html
** building package indices
** installing vignettes
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MOFA2' as MOFA2_1.2.2.zip
* DONE (MOFA2)