InterMine Team
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/InterMineR |
| git_branch: RELEASE_3_13 |
| git_last_commit: 1a090a5 |
| git_last_commit_date: 2021-05-27 05:34:42 -0400 (Thu, 27 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:08 -0400 (Fri, 15 Oct 2021).
|
To the developers/maintainers of the InterMineR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/InterMineR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 935/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| InterMineR 1.14.1 (landing page) InterMine Team
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: InterMineR |
| Version: 1.14.1 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/InterMineR_1.14.1.tar.gz && rm -rf InterMineR.buildbin-libdir && mkdir InterMineR.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=InterMineR.buildbin-libdir InterMineR_1.14.1.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL InterMineR_1.14.1.zip && rm InterMineR_1.14.1.tar.gz InterMineR_1.14.1.zip |
| StartedAt: 2021-10-14 08:55:37 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 08:56:29 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 52.3 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/InterMineR_1.14.1.tar.gz && rm -rf InterMineR.buildbin-libdir && mkdir InterMineR.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=InterMineR.buildbin-libdir InterMineR_1.14.1.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL InterMineR_1.14.1.zip && rm InterMineR_1.14.1.tar.gz InterMineR_1.14.1.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
0 4505k 0 1137 0 0 13849 0 0:05:33 --:--:-- 0:05:33 13865
60 4505k 60 2713k 0 0 2515k 0 0:00:01 0:00:01 --:--:-- 2514k
100 4505k 100 4505k 0 0 2887k 0 0:00:01 0:00:01 --:--:-- 2887k
install for i386
* installing *source* package 'InterMineR' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'intersect' in package 'InterMineR'
Creating a new generic function for 'union' in package 'InterMineR'
** help
Warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpaO9yyN/R.INSTALL190461e9356b/InterMineR/man/ListManager-methods.Rd:41: unexpected section header '\arguments'
Warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpaO9yyN/R.INSTALL190461e9356b/InterMineR/man/ListManager-methods.Rd:42: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpaO9yyN/R.INSTALL190461e9356b/InterMineR/man/ListManager-methods.Rd:50: unexpected section header '\arguments'
Warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpaO9yyN/R.INSTALL190461e9356b/InterMineR/man/ListManager-methods.Rd:51: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpaO9yyN/R.INSTALL190461e9356b/InterMineR/man/ListManager-methods.Rd:59: unexpected section header '\arguments'
Warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpaO9yyN/R.INSTALL190461e9356b/InterMineR/man/ListManager-methods.Rd:60: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpaO9yyN/R.INSTALL190461e9356b/InterMineR/man/ListManager-methods.Rd:63: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpaO9yyN/R.INSTALL190461e9356b/InterMineR/man/ListManager-methods.Rd:66: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpaO9yyN/R.INSTALL190461e9356b/InterMineR/man/ListManager-methods.Rd:69: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpaO9yyN/R.INSTALL190461e9356b/InterMineR/man/ListManager-methods.Rd:72: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpaO9yyN/R.INSTALL190461e9356b/InterMineR/man/ListManager-methods.Rd:80: unexpected section header '\arguments'
Warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpaO9yyN/R.INSTALL190461e9356b/InterMineR/man/ListManager-methods.Rd:81: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpaO9yyN/R.INSTALL190461e9356b/InterMineR/man/ListManager-methods.Rd:84: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpaO9yyN/R.INSTALL190461e9356b/InterMineR/man/ListManager-methods.Rd:87: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpaO9yyN/R.INSTALL190461e9356b/InterMineR/man/ListManager-methods.Rd:90: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpaO9yyN/R.INSTALL190461e9356b/InterMineR/man/ListManager-methods.Rd:98: unexpected section header '\arguments'
Warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpaO9yyN/R.INSTALL190461e9356b/InterMineR/man/ListManager-methods.Rd:99: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpaO9yyN/R.INSTALL190461e9356b/InterMineR/man/ListManager-methods.Rd:102: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpaO9yyN/R.INSTALL190461e9356b/InterMineR/man/ListManager-methods.Rd:105: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpaO9yyN/R.INSTALL190461e9356b/InterMineR/man/ListManager-methods.Rd:108: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpaO9yyN/R.INSTALL190461e9356b/InterMineR/man/ListManager-methods.Rd:116: unexpected section header '\arguments'
Warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpaO9yyN/R.INSTALL190461e9356b/InterMineR/man/ListManager-methods.Rd:117: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpaO9yyN/R.INSTALL190461e9356b/InterMineR/man/ListManager-methods.Rd:120: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpaO9yyN/R.INSTALL190461e9356b/InterMineR/man/ListManager-methods.Rd:123: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpaO9yyN/R.INSTALL190461e9356b/InterMineR/man/ListManager-methods.Rd:126: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpaO9yyN/R.INSTALL190461e9356b/InterMineR/man/ListManager-methods.Rd:134: unexpected section header '\arguments'
Warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpaO9yyN/R.INSTALL190461e9356b/InterMineR/man/ListManager-methods.Rd:135: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpaO9yyN/R.INSTALL190461e9356b/InterMineR/man/ListManager-methods.Rd:138: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpaO9yyN/R.INSTALL190461e9356b/InterMineR/man/ListManager-methods.Rd:141: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpaO9yyN/R.INSTALL190461e9356b/InterMineR/man/ListManager-methods.Rd:144: unknown macro '\item'
Warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpaO9yyN/R.INSTALL190461e9356b/InterMineR/man/ListManager-methods.Rd:147: unknown macro '\item'
*** installing help indices
converting help for package 'InterMineR'
finding HTML links ... done
InterMineR-class html
InterMineR-methods html
InterMineR-package html
ListManager-class html
ListManager-methods html
PL_DiabetesGenes html
PL_FlyTF_site_specific_TFs html
convertToGRanges html
convertToGeneAnswers html
convertToRangedSummarizedExperiment html
doEnrichment html
getDatasets html
getGeneIds html
getModel html
getRelease html
getTemplateQuery html
getTemplates html
getVersion html
getWidgets html
initInterMine html
listDatasets html
listMines html
list_manager html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/InterMineR.buildbin-libdir/00LOCK-InterMineR/00new/InterMineR/help/webservice-methods.html
newQuery html
runQuery html
setConstraints html
setQuery html
simplifyResult html
summary html
webservice-class html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: multiple methods tables found for 'union'
Warning: multiple methods tables found for 'intersect'
** testing if installed package can be loaded from final location
Warning: multiple methods tables found for 'union'
Warning: multiple methods tables found for 'intersect'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'InterMineR' ...
** testing if installed package can be loaded
Warning: multiple methods tables found for 'union'
Warning: multiple methods tables found for 'intersect'
* MD5 sums
packaged installation of 'InterMineR' as InterMineR_1.14.1.zip
* DONE (InterMineR)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'InterMineR' successfully unpacked and MD5 sums checked