Jianhong Ou
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/InPAS |
| git_branch: RELEASE_3_13 |
| git_last_commit: d402f5c |
| git_last_commit_date: 2021-05-19 12:12:03 -0400 (Wed, 19 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:08 -0400 (Fri, 15 Oct 2021).
|
To the developers/maintainers of the InPAS package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/InPAS.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 923/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| InPAS 2.0.0 (landing page) Jianhong Ou
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: InPAS |
| Version: 2.0.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/InPAS_2.0.0.tar.gz && rm -rf InPAS.buildbin-libdir && mkdir InPAS.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=InPAS.buildbin-libdir InPAS_2.0.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL InPAS_2.0.0.zip && rm InPAS_2.0.0.tar.gz InPAS_2.0.0.zip |
| StartedAt: 2021-10-14 10:51:05 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 10:52:26 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 81.0 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/InPAS_2.0.0.tar.gz && rm -rf InPAS.buildbin-libdir && mkdir InPAS.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=InPAS.buildbin-libdir InPAS_2.0.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL InPAS_2.0.0.zip && rm InPAS_2.0.0.tar.gz InPAS_2.0.0.zip
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0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
0 1080k 0 3835 0 0 47892 0 0:00:23 --:--:-- 0:00:23 47937
100 1080k 100 1080k 0 0 1532k 0 --:--:-- --:--:-- --:--:-- 1532k
install for i386
* installing *source* package 'InPAS' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'InPAS'
finding HTML links ... done
InPAS html
UTR3eSet-class html
finding level-2 HTML links ... done
adjust_distalCPs html
adjust_proximalCPs html
adjust_proximalCPsByNBC html
adjust_proximalCPsByPWM html
assemble_allCov html
assign_feature html
compensation html
extract_UTR3Anno html
fft.smooth html
filter_testOut html
find_segmentationSites html
find_valley html
fix_dbLockError html
gcComp html
gcContents html
get_PAscore html
get_PAscore2 html
get_UTR3CDS html
get_UTR3TotalCov html
get_UTR3eSet html
get_UTR3region html
get_depthWeight html
get_regionCov html
get_seqLen html
get_ssRleCov html
get_totalCov html
get_usage4plot html
get_zScoreCutoff html
mapComp html
parse_TxDb html
plot_utr3Usage html
polish_CPs html
remove_convergentUTR3s html
run_coverageQC html
run_fisherExactTest html
run_limmaAnalysis html
run_singleGroupAnalysis html
run_singleSampleAnalysis html
search_CPs html
search_distalCPs html
search_proximalCPs html
setup_CPsSearch html
setup_GSEA html
setup_sqlitedb html
test_dPDUI html
trim_seqnames html
utr3.mm10 html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'InPAS' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'InPAS' as InPAS_2.0.0.zip
* DONE (InPAS)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'InPAS' successfully unpacked and MD5 sums checked