Koustav Pal
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/HiCBricks |
| git_branch: RELEASE_3_13 |
| git_last_commit: f242bbd |
| git_last_commit_date: 2021-05-19 12:38:53 -0400 (Wed, 19 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:07 -0400 (Fri, 15 Oct 2021).
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To the developers/maintainers of the HiCBricks package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HiCBricks.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 856/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HiCBricks 1.10.0 (landing page) Koustav Pal
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: HiCBricks |
| Version: 1.10.0 |
| Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:HiCBricks.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings HiCBricks_1.10.0.tar.gz |
| StartedAt: 2021-10-15 00:21:45 -0400 (Fri, 15 Oct 2021) |
| EndedAt: 2021-10-15 00:30:19 -0400 (Fri, 15 Oct 2021) |
| EllapsedTime: 513.8 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HiCBricks.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:HiCBricks.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings HiCBricks_1.10.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/HiCBricks.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'HiCBricks/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'HiCBricks' version '1.10.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'HiCBricks' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
Brick_vizart_plot_heatmap 3.64 0.55 5.80
Brick_export_to_sparse 3.55 0.61 5.11
BrickContainer_unlink_resolution 3.05 0.45 5.73
Brick_get_matrix_within_coords 2.82 0.64 6.17
Brick_call_compartments 2.38 0.58 6.08
Brick_matrix_exists 1.85 0.75 6.89
Brick_get_matrix 2.00 0.57 13.92
BrickContainer_change_output_directory 1.48 0.32 6.11
BrickContainer_get_path_to_file 1.48 0.24 5.55
BrickContainer_list_resolutions 1.35 0.31 6.96
BrickContainer_list_chromosomes 1.39 0.23 8.41
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
Brick_export_to_sparse 4.00 0.71 5.48
Brick_get_matrix_within_coords 2.66 0.67 7.55
Brick_fetch_row_vector 2.37 0.72 5.09
Brick_get_entire_matrix 2.08 0.61 6.93
Brick_get_vector_values 2.14 0.53 12.96
Brick_get_matrix 1.98 0.60 6.72
Brick_get_matrix_mcols 1.86 0.58 6.05
Brick_matrix_isdone 1.95 0.47 8.45
Brick_list_rangekeys 1.49 0.27 7.88
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
HiCBricks.Rcheck/00install.out
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###
### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/HiCBricks_1.10.0.tar.gz && rm -rf HiCBricks.buildbin-libdir && mkdir HiCBricks.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=HiCBricks.buildbin-libdir HiCBricks_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL HiCBricks_1.10.0.zip && rm HiCBricks_1.10.0.tar.gz HiCBricks_1.10.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
47 2314k 47 1088k 0 0 2091k 0 0:00:01 --:--:-- 0:00:01 2090k
100 2314k 100 2314k 0 0 2671k 0 --:--:-- --:--:-- --:--:-- 2672k
install for i386
* installing *source* package 'HiCBricks' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'HiCBricks'
finding HTML links ... done
BrickContainer_change_experiment_name html
BrickContainer_change_output_directory
html
BrickContainer_get_path_to_file html
BrickContainer_list_chromosomes html
BrickContainer_list_experiment_name html
BrickContainer_list_files html
BrickContainer_list_output_directory html
BrickContainer_list_resolutions html
BrickContainer_unlink_resolution html
Brick_add_ranges html
Brick_call_compartments html
Brick_export_to_sparse html
Brick_fetch_range_index html
Brick_fetch_row_vector html
Brick_get_bintable html
Brick_get_chrominfo html
Brick_get_entire_matrix html
Brick_get_matrix html
Brick_get_matrix_mcols html
Brick_get_matrix_within_coords html
Brick_get_ranges html
Brick_get_values_by_distance html
Brick_get_vector_values html
Brick_list_matrices html
Brick_list_matrix_mcols html
Brick_list_mcool_normalisations html
Brick_list_mcool_resolutions html
Brick_list_rangekeys html
Brick_list_ranges_mcols html
Brick_load_cis_matrix_till_distance html
Brick_load_data_from_mcool html
Brick_load_data_from_sparse html
Brick_load_matrix html
Brick_local_score_differentiator html
Brick_make_ranges html
Brick_matrix_dimensions html
Brick_matrix_exists html
Brick_matrix_filename html
Brick_matrix_isdone html
Brick_matrix_issparse html
Brick_matrix_maxdist html
Brick_matrix_minmax html
Brick_mcool_normalisation_exists html
Brick_rangekey_exists html
Brick_return_region_position html
Brick_vizart_plot_heatmap html
Create_many_Bricks html
Create_many_Bricks_from_mcool html
HiCBricks html
load_BrickContainer html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'HiCBricks' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'HiCBricks' as HiCBricks_1.10.0.zip
* DONE (HiCBricks)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'HiCBricks' successfully unpacked and MD5 sums checked
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HiCBricks.Rcheck/examples_i386/HiCBricks-Ex.timings
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HiCBricks.Rcheck/examples_x64/HiCBricks-Ex.timings
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