Carlos Catania
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/GSgalgoR |
| git_branch: RELEASE_3_13 |
| git_last_commit: aa54268 |
| git_last_commit_date: 2021-05-21 21:14:34 -0400 (Fri, 21 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:07 -0400 (Fri, 15 Oct 2021).
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To the developers/maintainers of the GSgalgoR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GSgalgoR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 824/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| GSgalgoR 1.2.1 (landing page) Carlos Catania
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: GSgalgoR |
| Version: 1.2.1 |
| Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:GSgalgoR.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings GSgalgoR_1.2.1.tar.gz |
| StartedAt: 2021-10-15 00:09:43 -0400 (Fri, 15 Oct 2021) |
| EndedAt: 2021-10-15 00:16:46 -0400 (Fri, 15 Oct 2021) |
| EllapsedTime: 423.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: GSgalgoR.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:GSgalgoR.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings GSgalgoR_1.2.1.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/GSgalgoR.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'GSgalgoR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'GSgalgoR' version '1.2.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'GSgalgoR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
plot_pareto 3.29 0.08 7.49
classify_multiple 2.99 0.26 8.60
callback_base_report 2.87 0.31 8.99
callback_base_return_pop 2.56 0.21 7.83
create_centroids 2.37 0.12 6.48
to_list 2.30 0.11 6.66
to_dataframe 2.24 0.06 6.63
callback_default 2.00 0.23 7.97
callback_no_report 2.00 0.22 7.94
non_dominated_summary 2.17 0.05 6.62
galgo 1.80 0.08 6.11
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
classify_multiple 3.26 0.35 9.34
plot_pareto 3.47 0.10 8.34
callback_base_report 2.56 0.21 8.10
to_list 2.62 0.11 7.57
callback_no_report 2.30 0.28 8.13
callback_base_return_pop 2.26 0.25 8.13
callback_default 2.19 0.30 8.43
create_centroids 2.37 0.08 7.37
non_dominated_summary 2.30 0.03 6.86
to_dataframe 2.22 0.06 6.91
galgo 2.05 0.06 6.64
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'testthat.R'
OK
** running tests for arch 'x64' ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
GSgalgoR.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/GSgalgoR_1.2.1.tar.gz && rm -rf GSgalgoR.buildbin-libdir && mkdir GSgalgoR.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GSgalgoR.buildbin-libdir GSgalgoR_1.2.1.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL GSgalgoR_1.2.1.zip && rm GSgalgoR_1.2.1.tar.gz GSgalgoR_1.2.1.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
36 4080k 36 1504k 0 0 3647k 0 0:00:01 --:--:-- 0:00:01 3642k
100 4080k 100 4080k 0 0 6063k 0 --:--:-- --:--:-- --:--:-- 6062k
install for i386
* installing *source* package 'GSgalgoR' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'GSgalgoR'
finding HTML links ... done
GSgalgoR-package html
calculate_distance html
callback_base_report html
callback_base_return_pop html
callback_default html
callback_no_report html
classify_multiple html
cluster_algorithm html
cluster_classify html
cosine_similarity html
create_centroids html
galgo.Obj-class html
galgo html
k_centroids html
non_dominated_summary html
plot_pareto html
surv_fitness html
to_dataframe html
to_list html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'GSgalgoR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GSgalgoR' as GSgalgoR_1.2.1.zip
* DONE (GSgalgoR)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'GSgalgoR' successfully unpacked and MD5 sums checked
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GSgalgoR.Rcheck/tests_i386/testthat.Rout
R version 4.1.1 (2021-08-10) -- "Kick Things"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(GSgalgoR)
>
> test_check("GSgalgoR")
.......... k rnkIndex CrowD
result.1 8 0.02212350 201.10126 1 Inf
result.3 9 0.02402496 160.41638 1 1.37352
result.4 8 0.03651880 48.37265 1 Inf
k rnkIndex CrowD
result.1 8 0.02212350 201.10126 1 Inf
result.3 2 0.11803624 30.01863 1 Inf
result.4 4 0.04509859 173.43985 1 1.798893
......[ FAIL 0 | WARN 0 | SKIP 0 | PASS 13 ]
>
> proc.time()
user system elapsed
23.98 2.79 92.07
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GSgalgoR.Rcheck/tests_x64/testthat.Rout
R version 4.1.1 (2021-08-10) -- "Kick Things"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(GSgalgoR)
>
> test_check("GSgalgoR")
.......... k rnkIndex CrowD
result.1 8 0.02212350 201.10126 1 Inf
result.3 9 0.02402496 160.41638 1 1.37352
result.4 8 0.03651880 48.37265 1 Inf
k rnkIndex CrowD
result.1 8 0.02212350 201.10126 1 Inf
result.3 2 0.11803624 30.01863 1 Inf
result.4 4 0.04509859 173.43985 1 1.798893
......[ FAIL 0 | WARN 0 | SKIP 0 | PASS 13 ]
>
> proc.time()
user system elapsed
23.00 2.45 108.59
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GSgalgoR.Rcheck/examples_i386/GSgalgoR-Ex.timings
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GSgalgoR.Rcheck/examples_x64/GSgalgoR-Ex.timings
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