| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:03 -0400 (Fri, 15 Oct 2021).
|
To the developers/maintainers of the ELBOW package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ELBOW.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 564/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Graham Alvare
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | ERROR | skipped | skipped | |||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| Package: ELBOW |
| Version: 1.28.0 |
| Command: chmod a+r ELBOW -R && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data ELBOW |
| StartedAt: 2021-10-14 13:40:15 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 13:40:34 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 19.3 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### chmod a+r ELBOW -R && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data ELBOW
###
##############################################################################
##############################################################################
* checking for file 'ELBOW/DESCRIPTION' ... OK
* preparing 'ELBOW':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'Elbow_tutorial_vignette.Rnw' using Sweave
Warning: Package 'ELBOW' is deprecated and will be removed from Bioconductor
version 3.14
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which.max, which.min
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Setting options('download.file.method.GEOquery'='auto')
Setting options('GEOquery.inmemory.gpl'=FALSE)
trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/series/GSE20nnn/GSE20986/suppl//GSE20986_RAW.tar?tool=geoquery'
Content type 'application/x-tar' length 56360960 bytes (53.8 MB)
==================================================
downloaded 53.8 MB
Error: processing vignette 'Elbow_tutorial_vignette.Rnw' failed with diagnostics:
chunk 2 (label = load_limmma)
Error in library("simpleaffy") : there is no package called 'simpleaffy'
--- failed re-building 'Elbow_tutorial_vignette.Rnw'
SUMMARY: processing the following file failed:
'Elbow_tutorial_vignette.Rnw'
Error: Vignette re-building failed.
Execution halted