| Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:00 -0400 (Fri, 15 Oct 2021).
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To the developers/maintainers of the CeTF package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CeTF.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 274/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| CeTF 1.4.5 (landing page) Carlos Alberto Oliveira de Biagi Junior
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: CeTF |
| Version: 1.4.5 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/CeTF_1.4.5.tar.gz && rm -rf CeTF.buildbin-libdir && mkdir CeTF.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CeTF.buildbin-libdir CeTF_1.4.5.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL CeTF_1.4.5.zip && rm CeTF_1.4.5.tar.gz CeTF_1.4.5.zip |
| StartedAt: 2021-10-14 11:05:04 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 11:08:22 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 197.9 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/CeTF_1.4.5.tar.gz && rm -rf CeTF.buildbin-libdir && mkdir CeTF.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CeTF.buildbin-libdir CeTF_1.4.5.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL CeTF_1.4.5.zip && rm CeTF_1.4.5.tar.gz CeTF_1.4.5.zip
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install for i386
* installing *source* package 'CeTF' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppArmadillo/include' -I"c:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c PCIT.cpp -o PCIT.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppArmadillo/include' -I"c:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o CeTF.dll tmp.def PCIT.o RcppExports.o -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/CeTF.buildbin-libdir/00LOCK-CeTF/00new/CeTF/libs/i386
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'CeTF'
finding HTML links ... done
CeTF-class html
CeTFdemo html
CircosTargets html
InputData-methods html
NetworkData-methods html
OutputData-methods html
PCIT html
RIF html
RIFPlot html
RIF_input html
SmearPlot html
TFs html
bivar.awk html
clustCoef html
clustCoefPercentage html
densityPlot html
diffusion html
enrichPlot html
enrichdemo html
expDiff html
getDE-methods html
getData-methods html
getEnrich html
getGroupGO html
heatPlot html
histPlot html
netConditionsPlot html
netGOTFPlot html
normExp html
pcitC html
refGenes html
runAnalysis html
simCounts html
simNorm html
tolerance html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'CeTF' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c PCIT.cpp -o PCIT.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o CeTF.dll tmp.def PCIT.o RcppExports.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/CeTF.buildbin-libdir/CeTF/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CeTF' as CeTF_1.4.5.zip
* DONE (CeTF)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'CeTF' successfully unpacked and MD5 sums checked