Aaron Taudt
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/AneuFinder |
| git_branch: RELEASE_3_13 |
| git_last_commit: 1c7aed6 |
| git_last_commit_date: 2021-05-19 12:19:05 -0400 (Wed, 19 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:05:35 -0400 (Fri, 15 Oct 2021).
|
To the developers/maintainers of the AneuFinder package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/AneuFinder.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 56/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| AneuFinder 1.20.0 (landing page) Aaron Taudt
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: AneuFinder |
| Version: 1.20.0 |
| Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL AneuFinder |
| StartedAt: 2021-10-14 06:12:39 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 06:13:08 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 29.1 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL AneuFinder
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* installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’
* installing *source* package ‘AneuFinder’ ...
** using staged installation
** libs
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c R_interface.cpp -o R_interface.o
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c densities.cpp -o densities.o
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c init.cpp -o init.o
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c loghmm.cpp -o loghmm.o
loghmm.cpp:320: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
320 | #pragma omp parallel for
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loghmm.cpp:480: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
480 | #pragma omp parallel for
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loghmm.cpp:518: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
518 | #pragma omp parallel for
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loghmm.cpp:583: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
583 | #pragma omp parallel for
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g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c scalehmm.cpp -o scalehmm.o
scalehmm.cpp:384: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
384 | #pragma omp parallel for
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scalehmm.cpp:400: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
400 | #pragma omp parallel for
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scalehmm.cpp:694: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
694 | #pragma omp parallel for
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scalehmm.cpp:732: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
732 | #pragma omp parallel for
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scalehmm.cpp:791: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
791 | #pragma omp parallel for
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g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c utility.cpp -o utility.o
g++ -std=gnu++14 -shared -L/home/biocbuild/bbs-3.13-bioc/R/lib -L/usr/local/lib -o AneuFinder.so R_interface.o densities.o init.o loghmm.o scalehmm.o utility.o -L/home/biocbuild/bbs-3.13-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.13-bioc/R/library/00LOCK-AneuFinder/00new/AneuFinder/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (AneuFinder)