Olivier Gevaert
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/AMARETTO |
| git_branch: RELEASE_3_13 |
| git_last_commit: 3a94300 |
| git_last_commit_date: 2021-05-19 12:42:00 -0400 (Wed, 19 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:05:57 -0400 (Fri, 15 Oct 2021).
|
To the developers/maintainers of the AMARETTO package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/AMARETTO.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 51/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| AMARETTO 1.8.0 (landing page) Olivier Gevaert
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: AMARETTO |
| Version: 1.8.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/AMARETTO_1.8.0.tar.gz && rm -rf AMARETTO.buildbin-libdir && mkdir AMARETTO.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=AMARETTO.buildbin-libdir AMARETTO_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL AMARETTO_1.8.0.zip && rm AMARETTO_1.8.0.tar.gz AMARETTO_1.8.0.zip |
| StartedAt: 2021-10-14 11:01:28 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 11:02:50 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 81.9 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/AMARETTO_1.8.0.tar.gz && rm -rf AMARETTO.buildbin-libdir && mkdir AMARETTO.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=AMARETTO.buildbin-libdir AMARETTO_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL AMARETTO_1.8.0.zip && rm AMARETTO_1.8.0.tar.gz AMARETTO_1.8.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
30 5471k 30 1675k 0 0 1986k 0 0:00:02 --:--:-- 0:00:02 1985k
87 5471k 87 4769k 0 0 2628k 0 0:00:02 0:00:01 0:00:01 2628k
100 5471k 100 5471k 0 0 2678k 0 0:00:02 0:00:02 --:--:-- 2680k
install for i386
* installing *source* package 'AMARETTO' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'AMARETTO'
finding HTML links ... done
AMARETTO_CreateModuleData html
AMARETTO_CreateRegulatorPrograms html
AMARETTO_Download html
AMARETTO_EvaluateTestSet html
AMARETTO_ExportResults html
AMARETTO_HTMLreport html
AMARETTO_Initialize html
AMARETTO_LarsenBased html
AMARETTO_LearnRegulatoryProgramsLarsen
html
AMARETTO_Preprocess html
AMARETTO_ReassignGenesToClusters html
AMARETTO_Run html
AMARETTO_VisualizeModule html
BatchData html
Beta.NA html
ComBat_NoFiles html
CreateRegulatorData html
Driver_Genes html
FindTranscriptionallyPredictive_CNV html
GeneSetDescription html
GmtFromModules html
HyperGTestGeneEnrichment html
L html
Lambda_Sequence html
MsigdbMapping html
Preprocess_MAdata html
ProcessedDataLIHC html
Save_CancerSite html
TCGA_BatchCorrection_MolecularData html
TCGA_GENERIC_BatchCorrection html
TCGA_GENERIC_CheckBatchEffect html
TCGA_GENERIC_CleanUpSampleNames html
TCGA_GENERIC_GetSampleGroups html
TCGA_GENERIC_MergeData html
TCGA_Load_GISTICdata html
TCGA_Load_MolecularData html
aprior html
bprior html
build.design html
cacheResource html
computeGisticURL html
design.mat html
filter.absent html
geneFiltering html
get_firehoseData html
int.eprior html
it.sol html
list.batch html
plot_run_history html
postmean html
postvar html
printf html
readGMT html
read_gct html
trim.dat html
write_gct html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'AMARETTO' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'AMARETTO' as AMARETTO_1.8.0.zip
* DONE (AMARETTO)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'AMARETTO' successfully unpacked and MD5 sums checked